RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 SRCAPQ6ZRS2 3230 aa32.78■■■□□ 2.84
CPNE1-203ENST00000397442 LAMA4Q16363 1823 aa32.77■■■□□ 2.84
CPNE1-203ENST00000397442 SNX21Q969T3 373 aa32.77■■■□□ 2.84
CPNE1-203ENST00000397442 UPF3BQ9BZI7 483 aaKnown RBP32.77■■■□□ 2.84
CPNE1-203ENST00000397442 TM6SF1Q9BZW5 370 aa32.77■■■□□ 2.84
CPNE1-203ENST00000397442 ADAMTSL1Q8N6G6 1762 aa32.77■■■□□ 2.84
CPNE1-203ENST00000397442 RAD17O75943 681 aa32.76■■■□□ 2.84
CPNE1-203ENST00000397442 BTDP43251 543 aa32.76■■■□□ 2.84
CPNE1-203ENST00000397442 STOX1Q6ZVD7 989 aa32.76■■■□□ 2.84
CPNE1-203ENST00000397442 JAKMIP1Q96N16 626 aaKnown RBP32.76■■■□□ 2.84
CPNE1-203ENST00000397442 TBC1D2Q9BYX2 928 aa32.76■■■□□ 2.84
CPNE1-203ENST00000397442 BAG3O95817 575 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 VIL1P09327 827 aaKnown RBP32.75■■■□□ 2.83
CPNE1-203ENST00000397442 COL9A3Q14050 684 aaPredicted RBP32.75■■■□□ 2.83
CPNE1-203ENST00000397442 IMMTQ16891 758 aaKnown RBP32.75■■■□□ 2.83
CPNE1-203ENST00000397442 KIAA0825Q8IV33 1275 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 CRNKL1Q9BZJ0 848 aaKnown RBP32.75■■■□□ 2.83
CPNE1-203ENST00000397442 PSMD14O00487 310 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 SCNN1DP51172 638 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 NEK4P51957 841 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 SH3RF3Q8TEJ3 882 aaPredicted RBP32.75■■■□□ 2.83
CPNE1-203ENST00000397442 NACAP1Q9BZK3 213 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 NAPBQ9H115 298 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 ZSWIM6Q9HCJ5 1215 aa32.75■■■□□ 2.83
CPNE1-203ENST00000397442 HAND2P61296 217 aa32.74■■■□□ 2.83
CPNE1-203ENST00000397442 HHIPL2Q6UWX4 724 aa32.74■■■□□ 2.83
CPNE1-203ENST00000397442 JDP2Q8WYK2 163 aa32.74■■■□□ 2.83
CPNE1-203ENST00000397442 MRIQ9BWK5 157 aa32.74■■■□□ 2.83
CPNE1-203ENST00000397442 NBPF3Q9H094 633 aa32.74■■■□□ 2.83
CPNE1-203ENST00000397442 CDK5RAP2Q96SN8 1893 aa32.73■■■□□ 2.83
CPNE1-203ENST00000397442 CASTP20810 708 aaKnown RBP32.73■■■□□ 2.83
CPNE1-203ENST00000397442 KRT32Q14532 448 aa32.73■■■□□ 2.83
CPNE1-203ENST00000397442 RSBN1LQ6PCB5 846 aaPredicted RBP32.73■■■□□ 2.83
CPNE1-203ENST00000397442 NOL10Q9BSC4 688 aaKnown RBP32.73■■■□□ 2.83
CPNE1-203ENST00000397442 BAZ2AQ9UIF9 1905 aaKnown RBP32.73■■■□□ 2.83
CPNE1-203ENST00000397442 SOCS7O14512 581 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 RHBDL3P58872 404 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 CXCL9Q07325 125 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 GIMAP6Q6P9H5 292 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 CERS3Q8IU89 383 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 GMLQ99445 158 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 ZNF213O14771 459 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 CPA1P15085 419 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 TDO2P48775 406 aa32.72■■■□□ 2.83
CPNE1-203ENST00000397442 MYO3BQ8WXR4 1341 aa32.71■■■□□ 2.83
CPNE1-203ENST00000397442 E7EWF7 191 aa32.71■■■□□ 2.83
CPNE1-203ENST00000397442 HDLBPQ00341 1268 aaKnown RBP32.71■■■□□ 2.83
CPNE1-203ENST00000397442 TEKT1Q969V4 418 aa32.71■■■□□ 2.83
CPNE1-203ENST00000397442 DCP1AQ9NPI6 582 aaPredicted RBP32.71■■■□□ 2.83
CPNE1-203ENST00000397442 ATP8A2Q9NTI2 1148 aa32.71■■■□□ 2.83
CPNE1-203ENST00000397442 MKRN1Q9UHC7 482 aaKnown RBP32.71■■■□□ 2.83
CPNE1-203ENST00000397442 PSMA5P28066 241 aa32.7■■■□□ 2.83
CPNE1-203ENST00000397442 CRKP46108 304 aa32.7■■■□□ 2.83
CPNE1-203ENST00000397442 TTC14Q96N46 770 aa32.7■■■□□ 2.83
CPNE1-203ENST00000397442 ST18O60284 1047 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 YBX3P16989 372 aaKnown RBP eCLIP32.69■■■□□ 2.822e-6■■■■□ 21.8
CPNE1-203ENST00000397442 BECN1Q14457 450 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 ARHGAP27Q6ZUM4 889 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 RUFY3Q7L099 469 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 PLCG2P16885 1265 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 APOBEC3HQ6NTF7 200 aaKnown RBP32.69■■■□□ 2.82
CPNE1-203ENST00000397442 ZDHHC15Q96MV8 337 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 NEK1Q96PY6 1258 aa32.69■■■□□ 2.82
CPNE1-203ENST00000397442 SLC4A3P48751 1232 aa32.68■■■□□ 2.82
CPNE1-203ENST00000397442 TBC1D10CQ8IV04 446 aa32.68■■■□□ 2.82
CPNE1-203ENST00000397442 IL27Q8NEV9 243 aa32.68■■■□□ 2.82
CPNE1-203ENST00000397442 SERPINA10Q9UK55 444 aa32.68■■■□□ 2.82
CPNE1-203ENST00000397442 TIAM2Q8IVF5 1701 aa32.68■■■□□ 2.82
CPNE1-203ENST00000397442 SBF1O95248 1867 aa32.67■■■□□ 2.82
CPNE1-203ENST00000397442 CYP46A1Q9Y6A2 500 aa32.67■■■□□ 2.82
CPNE1-203ENST00000397442 FOCADQ5VW36 1801 aa32.67■■■□□ 2.82
CPNE1-203ENST00000397442 FZD9O00144 591 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 CIAPIN1Q6FI81 312 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 CTR9Q6PD62 1173 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 ZBTB12Q9Y330 459 aaPredicted RBP32.66■■■□□ 2.82
CPNE1-203ENST00000397442 PCDHAC2Q9Y5I4 1007 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 BLOC1S2Q6QNY1 142 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 HSCBQ8IWL3 235 aa32.66■■■□□ 2.82
CPNE1-203ENST00000397442 DICER1Q9UPY3 1922 aaKnown RBP32.65■■■□□ 2.82
CPNE1-203ENST00000397442 RPS6KB1P23443 525 aa32.65■■■□□ 2.82
CPNE1-203ENST00000397442 TEX11Q8IYF3 940 aa32.65■■■□□ 2.82
CPNE1-203ENST00000397442 AGBL3Q8NEM8 1001 aa32.65■■■□□ 2.82
CPNE1-203ENST00000397442 TGFBRAP1Q8WUH2 860 aa32.65■■■□□ 2.82
CPNE1-203ENST00000397442 TACC3Q9Y6A5 838 aa32.65■■■□□ 2.82
CPNE1-203ENST00000397442 NAV1Q8NEY1 1877 aa32.64■■■□□ 2.82
CPNE1-203ENST00000397442 USP5P45974 858 aa32.64■■■□□ 2.82
CPNE1-203ENST00000397442 CTDSPL2Q05D32 466 aa32.64■■■□□ 2.82
CPNE1-203ENST00000397442 PPARAQ07869 468 aa32.64■■■□□ 2.82
CPNE1-203ENST00000397442 ANAPC4Q9UJX5 808 aa32.64■■■□□ 2.82
CPNE1-203ENST00000397442 DDX60LQ5H9U9 1706 aaKnown RBP32.64■■■□□ 2.82
CPNE1-203ENST00000397442 USP17L12C9JPN9 530 aa32.63■■■□□ 2.81
CPNE1-203ENST00000397442 USP17L21D6R901 530 aa32.63■■■□□ 2.81
CPNE1-203ENST00000397442 SMIM22K7EJ46 135 aa32.63■■■□□ 2.81
CPNE1-203ENST00000397442 LAMB1P07942 1786 aa32.63■■■□□ 2.81
CPNE1-203ENST00000397442 ECM29Q5VYK3 1845 aa32.63■■■□□ 2.81
CPNE1-203ENST00000397442 CYP2D7A0A087X1C5 515 aa32.62■■■□□ 2.81
CPNE1-203ENST00000397442 LMNB1P20700 586 aa32.62■■■□□ 2.81
CPNE1-203ENST00000397442 CDC42EP5Q6NZY7 148 aa32.62■■■□□ 2.81
CPNE1-203ENST00000397442 K7ELQ4 463 aaPredicted RBP32.62■■■□□ 2.81
CPNE1-203ENST00000397442 TNIP1Q15025 636 aa32.62■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms