RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CIAO1O76071 339 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 PDCP20941 246 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 R3HDM1Q15032 1099 aaKnown RBP12.95□□□□□ -0.34
CUX1-204ENST00000393824 MUM1L1Q5H9M0 696 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 TRIM34Q9BYJ4 488 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 PDRG1Q9NUG6 133 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 BCCIPQ9P287 314 aaKnown RBP eCLIP12.95□□□□□ -0.34
CUX1-204ENST00000393824 PSDA5PKW4 1024 aaPredicted RBP12.94□□□□□ -0.34
CUX1-204ENST00000393824 ZBTB7AO95365 584 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 CASTP20810 708 aaKnown RBP12.94□□□□□ -0.34
CUX1-204ENST00000393824 CCZ1BP86790 482 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 CCZ1P86791 482 aaPredicted RBP12.94□□□□□ -0.34
CUX1-204ENST00000393824 ST3GAL1Q11201 340 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 IQCB1Q15051 598 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 CYP46A1Q9Y6A2 500 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 A0A1B0GUL7 405 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 RAD51AP2Q09MP3 1159 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 CRY2Q49AN0 593 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 METTL24Q5JXM2 366 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 LARP1BQ659C4 914 aaKnown RBP12.94□□□□□ -0.34
CUX1-204ENST00000393824 EDC3Q96F86 508 aaKnown RBP12.94□□□□□ -0.34
CUX1-204ENST00000393824 DNAJC25Q9H1X3 360 aa12.94□□□□□ -0.34
CUX1-204ENST00000393824 IFIT2P09913 472 aaKnown RBP12.93□□□□□ -0.34
CUX1-204ENST00000393824 PLA2G4AP47712 749 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 CCDC93Q567U6 631 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 OLFM4Q6UX06 510 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 NEUROD6Q96NK8 337 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 ALDH8A1Q9H2A2 487 aaPredicted RBP12.93□□□□□ -0.34
CUX1-204ENST00000393824 SPEF2Q9C093 1822 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 ZNF609O15014 1411 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 GOLGA6L4A6NEF3 574 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 ZRANB2O95218 330 aaKnown RBP eCLIP12.93□□□□□ -0.34
CUX1-204ENST00000393824 TUBB4AP04350 444 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 PNMA6AP0CW24 399 aaPredicted RBP12.93□□□□□ -0.34
CUX1-204ENST00000393824 CLCN6P51797 869 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 TEX35Q5T0J7 233 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 MPHOSPH8Q99549 860 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 YY1AP1Q9H869 796 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 EFCC1Q9HA90 598 aa12.93□□□□□ -0.34
CUX1-204ENST00000393824 ANKRD31Q8N7Z5 1873 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 CCDC69A6NI79 296 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 CHGBP05060 677 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 KLRK1P26718 216 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 CHRNDQ07001 517 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 ARID5BQ14865 1188 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 ME3Q16798 604 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 ERCC6LQ2NKX8 1250 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 CEP126Q9P2H0 1117 aa12.92□□□□□ -0.34
CUX1-204ENST00000393824 GOLGA6L19H0YKK7 550 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 HIP1O00291 1037 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 PDE8BO95263 885 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 ZKSCAN1P17029 563 aaPredicted RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 PSMA5P28066 241 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 ST5P78524 1137 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 PI16Q6UXB8 463 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 CDC37L1Q7L3B6 337 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 TXLNBQ8N3L3 684 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 LEO1Q8WVC0 666 aaPredicted RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 SPATA32Q96LK8 384 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 BOLA2Q9H3K6 86 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 MINPP1Q9UNW1 487 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 PARP3Q9Y6F1 533 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 NRXN2Q9P2S2 1712 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 KLRG2A4D1S0 409 aaPredicted RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 CLGNO14967 610 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 ATP8B1O43520 1251 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 NR1I2O75469 434 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 CPA1P15085 419 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 TPM4P67936 248 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 SCARF1Q14162 830 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 ANKRD1Q15327 319 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 CWC27Q6UX04 472 aaKnown RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 ANKRD18AQ8IVF6 992 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 GTF3C6Q969F1 213 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 GPATCH3Q96I76 525 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 SNRKQ9NRH2 765 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
CUX1-204ENST00000393824 ATF5Q9Y2D1 282 aaPredicted RBP12.91□□□□□ -0.34
CUX1-204ENST00000393824 HMGB2P26583 209 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 CHRNA5P30532 468 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 IGHMBP2P38935 993 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 NECTIN1Q15223 517 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 XAGE2Q96GT9 111 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 JAKMIP1Q96N16 626 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 UBXN6Q9BZV1 441 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 BSDC1Q9NW68 430 aaPredicted RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 TRMT1Q9NXH9 659 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 FGFR2P21802 821 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 GSDMDP57764 484 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 FAM173BQ6P4H8 233 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 DDX46Q7L014 1031 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 FILIP1Q7Z7B0 1213 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 EVI5LQ96CN4 794 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 CDC5LQ99459 802 aaKnown RBP12.9□□□□□ -0.34
CUX1-204ENST00000393824 BRIP1Q9BX63 1249 aa12.9□□□□□ -0.34
CUX1-204ENST00000393824 QSER1Q2KHR3 1735 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 SRGNP10124 158 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 HSP90B1P14625 803 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms