RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DACH1Q9UI36 760 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 FLT4P35916 1363 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 CHL1O00533 1208 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 RECKO95980 971 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 GMPRP36959 345 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 MARSP56192 900 aaKnown RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 TMC7Q7Z402 723 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 IL17RAQ96F46 866 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 KLK14Q9P0G3 267 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 BRCA1P38398 1863 aaKnown RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 FZD6O60353 706 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 P4HBP07237 508 aaKnown RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 TRIM27P14373 513 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 NPR3P17342 541 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 ARID4AP29374 1257 aaPredicted RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 RRS1Q15050 365 aaKnown RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 C7orf43Q8WVR3 580 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 C2orf49Q9BVC5 232 aaPredicted RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 STK26Q9P289 416 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 TNS3Q68CZ2 1445 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 MAST2Q6P0Q8 1798 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 FAM83GA6ND36 823 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 RBAK-RBAKDNI3L0D1 243 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 HOXC9P31274 260 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 TXLNAP40222 546 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 PDE3AQ14432 1141 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 GRIN2CQ14957 1233 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 HSP90AB2PQ58FF8 381 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 SLC9A9Q8IVB4 645 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 TSR2Q969E8 191 aaKnown RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 SLC26A8Q96RN1 970 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 AVENQ9NQS1 362 aaPredicted RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 MBIPQ9NS73 344 aa3.04□□□□□ -1.92
VPS54-202ENST00000354504 SCHIP1Q9P0W5 487 aaPredicted RBP3.04□□□□□ -1.92
VPS54-202ENST00000354504 KIF13BQ9NQT8 1826 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 BCL9LQ86UU0 1499 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 ALDH1A1P00352 501 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 SAFB2Q14151 953 aaKnown RBP eCLIP3.03□□□□□ -1.92
VPS54-202ENST00000354504 PI16Q6UXB8 463 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 C8orf58Q8NAV2 365 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 SSH1Q8WYL5 1049 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 CNKSR1Q969H4 720 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 SIPA1L1O43166 1804 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 CACNA1SQ13698 1873 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 COL11A2P13942 1736 aaPredicted RBP3.03□□□□□ -1.92
VPS54-202ENST00000354504 RBM47A0AV96 593 aaKnown RBP3.03□□□□□ -1.92
VPS54-202ENST00000354504 FOXO3O43524 673 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 ATP1A2P50993 1020 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 USP4Q13107 963 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 NFE2L2Q16236 605 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 ZNF280CQ8ND82 737 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 NGLY1Q96IV0 654 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 TIAM2Q8IVF5 1701 aa3.03□□□□□ -1.92
VPS54-202ENST00000354504 PIK3R2O00459 728 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 RELBQ01201 579 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 MLECQ14165 292 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 CC2D2BQ6DHV5 1058 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 SLC4A9Q96Q91 983 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 FHDC1Q9C0D6 1143 aaPredicted RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 ANTXR1Q9H6X2 564 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 RRP7AQ9Y3A4 280 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 HCN4Q9Y3Q4 1203 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 ADCY9O60503 1353 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 GREB1LQ9C091 1923 aaPredicted RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 MYH2Q9UKX2 1941 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 CT47B1P0C2W7 299 aaPredicted RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 BMP1P13497 986 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 MAPK1P28482 360 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 SRSF11Q05519 484 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 HDAC1Q13547 482 aaPredicted RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 MTHFSDQ2M296 383 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 KRT24Q2M2I5 525 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 ALDH1L2Q3SY69 923 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 MORC1Q86VD1 984 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 ARHGEF25Q86VW2 580 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 GLYCTKQ8IVS8 523 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 SMC5Q8IY18 1101 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 CCDC116Q8IYX3 515 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 IL17REQ8NFR9 667 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 BCL2L13Q9BXK5 485 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 JCADQ9P266 1359 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 EIF1AXP47813 144 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 HIRAP54198 1017 aaPredicted RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 ORC1Q13415 861 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 PANK1Q8TE04 598 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 THUMPD2Q9BTF0 503 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 IFT57Q9NWB7 429 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 FER1L6Q2WGJ9 1857 aa3.02□□□□□ -1.93
VPS54-202ENST00000354504 RBBP6Q7Z6E9 1792 aaKnown RBP3.02□□□□□ -1.93
VPS54-202ENST00000354504 EML1O00423 815 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 THBS1P07996 1170 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 COL15A1P39059 1388 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 CENPFP49454 3210 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 ADAMTSL1Q8N6G6 1762 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 UPP2O95045 317 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 PRKAR2BP31323 418 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 IRS1P35568 1242 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 CTSOP43234 321 aaPredicted RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 EXOSC9Q06265 439 aaKnown RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 MVPQ14764 893 aaKnown RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms