RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 CRY2Q49AN0 593 aa15.33■□□□□ 0.04
CPNE1-201ENST00000317677 DHX32Q7L7V1 743 aaKnown RBP15.33■□□□□ 0.04
CPNE1-201ENST00000317677 ADGRA1Q86SQ6 560 aa15.33■□□□□ 0.04
CPNE1-201ENST00000317677 PDCL2Q8N4E4 241 aa15.33■□□□□ 0.04
CPNE1-201ENST00000317677 CHD4Q14839 1912 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 NPHP1O15259 732 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 MBD4O95243 580 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 GJB2P29033 226 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 ZNF384Q8TF68 577 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 ANKRD2Q9GZV1 360 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 OGFRQ9NZT2 677 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 DENND2AQ9ULE3 1009 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 SMC3Q9UQE7 1217 aa15.32■□□□□ 0.04
CPNE1-201ENST00000317677 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.32■□□□□ 0.04
CPNE1-201ENST00000317677 SYT1P21579 422 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 MCTP1Q6DN14 999 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 CHST3Q7LGC8 479 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 BRF1Q92994 677 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 ARMT1Q9H993 441 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 GPHNQ9NQX3 736 aaPredicted RBP15.31■□□□□ 0.04
CPNE1-201ENST00000317677 CTNNA3Q9UI47 895 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 TCHHQ07283 1943 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 LRRC37AA6NMS7 1700 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 TIAM2Q8IVF5 1701 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 CDK11BP21127 795 aaKnown RBP15.31■□□□□ 0.04
CPNE1-201ENST00000317677 STK3Q13188 491 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 IMMTQ16891 758 aaKnown RBP15.31■□□□□ 0.04
CPNE1-201ENST00000317677 TBC1D10CQ8IV04 446 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 MB21D2Q8IYB1 491 aaPredicted RBP15.31■□□□□ 0.04
CPNE1-201ENST00000317677 LCORLQ8N3X6 602 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 TACC3Q9Y6A5 838 aa15.31■□□□□ 0.04
CPNE1-201ENST00000317677 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.31■□□□□ 0.04
CPNE1-201ENST00000317677 LTBP1Q14766 1721 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 PRKAB2O43741 272 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 HMGB1P09429 215 aaKnown RBP15.3■□□□□ 0.04
CPNE1-201ENST00000317677 ANTXR2P58335 489 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 NOLC1Q14978 699 aaKnown RBP eCLIP15.3■□□□□ 0.043e-8■□□□□ 8.2
CPNE1-201ENST00000317677 CAVIN4Q5BKX8 364 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 DNTTIP2Q5QJE6 756 aaKnown RBP15.3■□□□□ 0.04
CPNE1-201ENST00000317677 AIDAQ96BJ3 306 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 MAST2Q6P0Q8 1798 aa15.3■□□□□ 0.04
CPNE1-201ENST00000317677 APOBRQ0VD83 1088 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 GTF3C6Q969F1 213 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 GNL3LQ9NVN8 582 aaKnown RBP15.29■□□□□ 0.04
CPNE1-201ENST00000317677 LRP2BPQ9P2M1 347 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 CGNQ9P2M7 1197 aaKnown RBP15.29■□□□□ 0.04
CPNE1-201ENST00000317677 COL11A2P13942 1736 aaPredicted RBP15.29■□□□□ 0.04
CPNE1-201ENST00000317677 WDR33Q9C0J8 1336 aaKnown RBP15.29■□□□□ 0.04
CPNE1-201ENST00000317677 GSG1L2A8MUP6 293 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 STX6O43752 255 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 FAM193AP78312 1265 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 ALX1Q15699 326 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 MIGA1Q8NAN2 632 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 ABCF2Q9UG63 623 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 MTMR6Q9Y217 621 aa15.29■□□□□ 0.04
CPNE1-201ENST00000317677 KLRG2A4D1S0 409 aaPredicted RBP15.28■□□□□ 0.04
CPNE1-201ENST00000317677 PATL2C9JE40 543 aaKnown RBP15.28■□□□□ 0.04
CPNE1-201ENST00000317677 HIBADHP31937 336 aaKnown RBP15.28■□□□□ 0.04
CPNE1-201ENST00000317677 IRX5P78411 483 aaPredicted RBP15.28■□□□□ 0.04
CPNE1-201ENST00000317677 ST5P78524 1137 aa15.28■□□□□ 0.04
CPNE1-201ENST00000317677 SCRN1Q12765 414 aa15.28■□□□□ 0.04
CPNE1-201ENST00000317677 SYCP1Q15431 976 aa15.28■□□□□ 0.04
CPNE1-201ENST00000317677 IFNL3Q8IZI9 196 aa15.28■□□□□ 0.04
CPNE1-201ENST00000317677 GPR101Q96P66 508 aaPredicted RBP15.28■□□□□ 0.04
CPNE1-201ENST00000317677 ZMYM6O95789 1325 aa15.28■□□□□ 0.04
CPNE1-201ENST00000317677 CCDC66A2RUB6 948 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 ZNF213O14771 459 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 CTIFO43310 598 aaKnown RBP15.27■□□□□ 0.04
CPNE1-201ENST00000317677 JAK2O60674 1132 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 ZSCAN22P10073 491 aaPredicted RBP15.27■□□□□ 0.04
CPNE1-201ENST00000317677 CYP7A1P22680 504 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 VPS37DQ86XT2 251 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 FBXL16Q8N461 479 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 CD2APQ9Y5K6 639 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 KIAA1551Q9HCM1 1747 aa15.27■□□□□ 0.04
CPNE1-201ENST00000317677 PDS5AQ29RF7 1337 aaKnown RBP15.27■□□□□ 0.03
CPNE1-201ENST00000317677 CCDC88AQ3V6T2 1871 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 SEMA3EO15041 775 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 PFKFB2O60825 505 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 APPP05067 770 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 GPSM2P81274 684 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 GPR162Q16538 588 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 UVSSAQ2YD98 709 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 ZNF771Q7L3S4 317 aaPredicted RBP15.27■□□□□ 0.03
CPNE1-201ENST00000317677 NLGN1Q8N2Q7 840 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 RPGRQ92834 1020 aaKnown RBP15.27■□□□□ 0.03
CPNE1-201ENST00000317677 RIOK1Q9BRS2 568 aaKnown RBP15.27■□□□□ 0.03
CPNE1-201ENST00000317677 INCENPQ9NQS7 918 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 RAI14Q9P0K7 980 aa15.27■□□□□ 0.03
CPNE1-201ENST00000317677 VGLL3A8MV65 326 aa15.26■□□□□ 0.03
CPNE1-201ENST00000317677 CTDNEP1O95476 244 aa15.26■□□□□ 0.03
CPNE1-201ENST00000317677 CHRM1P11229 460 aaPredicted RBP15.26■□□□□ 0.03
CPNE1-201ENST00000317677 YY1P25490 414 aa15.26■□□□□ 0.03
CPNE1-201ENST00000317677 HOXA10P31260 410 aaPredicted RBP15.26■□□□□ 0.03
CPNE1-201ENST00000317677 BAZ2AQ9UIF9 1905 aaKnown RBP15.26■□□□□ 0.03
CPNE1-201ENST00000317677 NEDD4P46934 1319 aa15.26■□□□□ 0.03
CPNE1-201ENST00000317677 XDHP47989 1333 aa15.26■□□□□ 0.03
CPNE1-201ENST00000317677 ZBTB22O15209 634 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 EVCP57679 992 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 FOXD4L6Q3SYB3 417 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms