RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 LCA5Q86VQ0 697 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 POMGNT1Q8WZA1 660 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 CAMSAP2Q08AD1 1489 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 HMGB1P1B2RPK0 211 aaPredicted RBP12.7□□□□□ -0.38
PTPN4-201ENST00000263708 HHATQ5VTY9 493 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 GAPVD1Q14C86 1478 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 TBC1D8O95759 1140 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 ZSCAN22P10073 491 aaPredicted RBP12.7□□□□□ -0.38
PTPN4-201ENST00000263708 DNAJC25Q9H1X3 360 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 VCX3AQ9NNX9 186 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 PTPRCP08575 1304 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 ITKQ08881 620 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 TBC1D9Q6ZT07 1266 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 BRF1Q92994 677 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 SAP30BPQ9UHR5 308 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 DDX39AO00148 427 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 CCNT1O60563 726 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 TRIM31Q9BZY9 425 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 CD2APQ9Y5K6 639 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 PPFIA1Q13136 1202 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 HDXQ7Z353 690 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 ACTN4O43707 911 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 PDZD8Q8NEN9 1154 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 NOX5Q96PH1 765 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 TRIM56Q9BRZ2 755 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 FANCD2Q9BXW9 1451 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 SUPT6HQ7KZ85 1726 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 NKTRP30414 1462 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 CLNS1AP54105 237 aaKnown RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 A0A1B0GUL7 405 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 PTPDC1A2A3K4 754 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 GNA11P29992 359 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 UVSSAQ2YD98 709 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 MED10Q9BTT4 135 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 IVNS1ABPQ9Y6Y0 642 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 IL1RL1Q01638 556 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 SSH1Q8WYL5 1049 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 TRAF5O00463 557 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 MYCLP12524 364 aaPredicted RBP12.69□□□□□ -0.38
PTPN4-201ENST00000263708 DCUN1D2Q6PH85 259 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 CHST3Q7LGC8 479 aa12.69□□□□□ -0.38
PTPN4-201ENST00000263708 PARP1P09874 1014 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 CASP2P42575 452 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 ALDH1L2Q3SY69 923 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 B4GALNT4Q76KP1 1039 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 ARHGAP24Q8N264 748 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 ATP2A3Q93084 1043 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 SPDYE2BA6NHP3 402 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 SPDYE6P0CI01 402 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 ARFGAP2Q8N6H7 521 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 LRPPRCP42704 1394 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GOLGA6CA6NDK9 693 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GOLGA6BA6NDN3 693 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GSTA1P08263 222 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GSTA2P09210 222 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GOLGA6DP0CG33 693 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 NLRP3Q96P20 1036 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 HAUS8Q9BT25 410 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GOLGA6AQ9NYA3 693 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 FAM170AA1A519 330 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 CALUO43852 315 aaPredicted RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 RUFY3Q7L099 469 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 MIGA1Q8NAN2 632 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 COG7P83436 770 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 FOXO3O43524 673 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 PARD3BQ8TEW8 1205 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 ASIC3Q9UHC3 531 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 BZW2Q9Y6E2 419 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 SPECC1L-ADORA2AF8WAN1 911 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 MX2P20592 715 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 EPRSP07814 1512 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 PRPF6O94906 941 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 PPP4R1Q8TF05 950 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 GPCPD1Q9NPB8 672 aa12.68□□□□□ -0.38
PTPN4-201ENST00000263708 CFAP65Q6ZU64 1925 aaKnown RBP12.68□□□□□ -0.38
PTPN4-201ENST00000263708 SV2BQ7L1I2 683 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 ZC3H12CQ9C0D7 883 aaKnown RBP12.67□□□□□ -0.38
PTPN4-201ENST00000263708 SUDS3Q9H7L9 328 aaPredicted RBP12.67□□□□□ -0.38
PTPN4-201ENST00000263708 PLCG2P16885 1265 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 ASIC2Q16515 512 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 MGARPQ8TDB4 240 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 AFAP1L1Q8TED9 768 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 SPDL1Q96EA4 605 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 KRBA2Q6ZNG9 492 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 TCEANC2Q96MN5 208 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 NYXQ9GZU5 481 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 BAG5Q9UL15 447 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 NIP7Q9Y221 180 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPN4-201ENST00000263708 SCYL1Q96KG9 808 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 DDX21Q9NR30 783 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPN4-201ENST00000263708 CCDC186Q7Z3E2 898 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 NOC4LQ9BVI4 516 aaKnown RBP12.67□□□□□ -0.38
PTPN4-201ENST00000263708 TFCP2L1Q9NZI6 479 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 FAM135AQ9P2D6 1515 aa12.67□□□□□ -0.38
PTPN4-201ENST00000263708 VWA3AA6NCI4 1184 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 USP48Q86UV5 1035 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 DCLK2Q8N568 766 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 RBSNQ9H1K0 784 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms