RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PI4KAP2A4QPH2 592 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 TSPY2A6NKD2 308 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 CLTAP09496 248 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 ATP5DP30049 168 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 PI4KAP1Q8N8J0 262 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 RABGAP1Q9Y3P9 1069 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 SH3BGRP55822 239 aaPredicted RBP11.71□□□□□ -0.53
VCL-201ENST00000211998 PHLDB2Q86SQ0 1253 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 CCDC63Q8NA47 563 aa11.71□□□□□ -0.53
VCL-201ENST00000211998 TXNDC9O14530 226 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 BMP15O95972 392 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 LRRC8AQ8IWT6 810 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 STAG1Q8WVM7 1258 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 JAKMIP2Q96AA8 810 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 RNASE9P60153 205 aaKnown RBP11.71□□□□□ -0.54
VCL-201ENST00000211998 PAK2Q13177 524 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 LONRF3Q496Y0 759 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 RASIP1Q5U651 963 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 FAM173BQ6P4H8 233 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 ANKRD13DQ6ZTN6 518 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 RUFY3Q7L099 469 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 MPHOSPH6Q99547 160 aaKnown RBP11.71□□□□□ -0.54
VCL-201ENST00000211998 PLEKHA4Q9H4M7 779 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 DDX21Q9NR30 783 aaKnown RBP eCLIP11.71□□□□□ -0.54
VCL-201ENST00000211998 TEX14Q8IWB6 1497 aa11.71□□□□□ -0.54
VCL-201ENST00000211998 ATP2A1O14983 1001 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 ALDH1L1O75891 902 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 MTX1Q13505 466 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 SLC24A3Q9HC58 644 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 DISP3Q9P2K9 1392 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 RFC4P35249 363 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 ETF1P62495 437 aaKnown RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 CALCOCO2Q13137 446 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 SREK1Q8WXA9 508 aaKnown RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 TBC1D5Q92609 795 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 KRT23Q9C075 422 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 USH1CQ9Y6N9 552 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 DUOX2Q9NRD8 1548 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 MAGEA9P43362 315 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 CEBPAP49715 358 aaPredicted RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 TTLL12Q14166 644 aaPredicted RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 LRRC23Q53EV4 343 aaPredicted RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 FYB2Q5VWT5 728 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 MMS22LQ6ZRQ5 1243 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 GSTA5Q7RTV2 222 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 TMTC2Q8N394 836 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 ZBTB22O15209 634 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 TTC19Q6DKK2 380 aaPredicted RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 TSNARE1Q96NA8 513 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 DCTPP1Q9H773 170 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 ZBTB40Q9NUA8 1239 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 PTPDC1A2A3K4 754 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 TMEM110-MUSTN1A8MSY1 372 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 EXOC4Q96A65 974 aa11.7□□□□□ -0.54
VCL-201ENST00000211998 XPO4Q9C0E2 1151 aaKnown RBP11.7□□□□□ -0.54
VCL-201ENST00000211998 ERBB4Q15303 1308 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 RNF123Q5XPI4 1314 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 CPA1P15085 419 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 CHMLP26374 656 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 PSMC4P43686 418 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 TPD52P55327 224 aaPredicted RBP11.69□□□□□ -0.54
VCL-201ENST00000211998 CNNM2Q9H8M5 875 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 ATP5J2-PTCD1G3V325 749 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 ATL3Q6DD88 541 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 BIRC2Q13490 618 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 ZKSCAN8Q15776 578 aaPredicted RBP11.69□□□□□ -0.54
VCL-201ENST00000211998 ASXL1Q8IXJ9 1541 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 UHRF1BP1LA0JNW5 1464 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 BRD1O95696 1058 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 NBPF7P0C2Y1 421 aaPredicted RBP11.69□□□□□ -0.54
VCL-201ENST00000211998 LEO1Q8WVC0 666 aaPredicted RBP11.69□□□□□ -0.54
VCL-201ENST00000211998 SECISBP2LQ93073 1101 aaKnown RBP11.69□□□□□ -0.54
VCL-201ENST00000211998 FAN1Q9Y2M0 1017 aa11.69□□□□□ -0.54
VCL-201ENST00000211998 COG7P83436 770 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 TRIM14Q14142 442 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 CREB3L3Q68CJ9 461 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 VPS52Q8N1B4 723 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 RAB3IPQ96QF0 476 aaPredicted RBP11.68□□□□□ -0.54
VCL-201ENST00000211998 VPS16Q9H269 839 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 RAD51AP2Q09MP3 1159 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 NBPF6Q5VWK0 638 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 TAOK1Q7L7X3 1001 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 NBPF5PQ86XG9 351 aaPredicted RBP11.68□□□□□ -0.54
VCL-201ENST00000211998 TMTC1Q8IUR5 882 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 NBPF4Q96M43 638 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 SAMM50Q9Y512 469 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 ITSN2Q9NZM3 1697 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 MAP7D1Q3KQU3 841 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 WDR78Q5VTH9 848 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 BRAPQ7Z569 592 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 ZCRB1Q8TBF4 217 aaKnown RBP11.68□□□□□ -0.54
VCL-201ENST00000211998 ERCC3P19447 782 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 NLRP12P59046 1061 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 IFT88Q13099 833 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 ARHGAP24Q8N264 748 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 ERMNQ8TAM6 284 aa11.68□□□□□ -0.54
VCL-201ENST00000211998 UTP11Q9Y3A2 253 aaKnown RBP11.68□□□□□ -0.54
VCL-201ENST00000211998 ZBTB43O43298 467 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 OPHN1O60890 802 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 AKAP4Q5JQC9 854 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms