RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ATP6V1FQ16864 119 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 LRRC37A5PQ49AS3 106 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 TMEM182Q6ZP80 229 aaPredicted RBP11.17□□□□□ -0.62
UPF1-202ENST00000594243 CITED4Q96RK1 184 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 SPATA25Q9BR10 227 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 TMEM147Q9BVK8 224 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 SLC25A31Q9H0C2 315 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 ALG5Q9Y673 324 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 K7EQG2 157 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 PET100P0DJ07 73 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 RAB31Q13636 194 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 RGS21Q2M5E4 152 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 S100A7AQ86SG5 101 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 APRG1Q8IVJ8 170 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 TMEM217Q8N7C4 229 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 OR1B1Q8NGR6 318 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 DCANP1Q8TF63 244 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 PPP1R1CQ8WVI7 109 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 MAP6D1Q9H9H5 199 aa11.16□□□□□ -0.62
UPF1-202ENST00000594243 COL7A1Q02388 2944 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 IGSF23A1L1A6 192 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 PLP1P60201 277 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 RAP2BP61225 183 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 PXDC1Q5TGL8 231 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 ZNF546Q86UE3 836 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 OR8I2Q8N0Y5 310 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 RCHY1Q96PM5 261 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 NRN1Q9NPD7 142 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 UQCC1Q9NVA1 299 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 OR5AC2Q9NZP5 309 aa11.15□□□□□ -0.62
UPF1-202ENST00000594243 AGPAT2O15120 278 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 HYPMO75409 117 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 LINC00869P0C866 280 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 APOC4P55056 127 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 DEFB131AP59861 70 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 VWC2Q2TAL6 325 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 STPG3Q8N7X2 389 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 MED28Q9H204 178 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 SEPSECSQ9HD40 501 aaKnown RBP11.14□□□□□ -0.63
UPF1-202ENST00000594243 RNF24Q9Y225 148 aa11.14□□□□□ -0.63
UPF1-202ENST00000594243 KIR2DL5BA0A0G2JN68 375 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 KIR2DL5BA0A0G2JPC4 375 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 ZNF98A6NK75 572 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 H0YIZ8 118 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 MPC2O95563 127 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 OR5G3P0C626 314 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 CAMLGP49069 296 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 SNRPD3P62318 126 aaKnown RBP11.13□□□□□ -0.63
UPF1-202ENST00000594243 NHLH2Q02577 135 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 KIR2DL5AQ8N109 375 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 FAM24BQ8N5W8 94 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 KIR2DL5BQ8NHK3 375 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 WWC2-AS2Q96NR7 200 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 GPR82Q96P67 336 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 ARL6Q9H0F7 186 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 SLC25A22Q9H936 323 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 HIGD1AQ9Y241 93 aa11.13□□□□□ -0.63
UPF1-202ENST00000594243 DNAH9Q9NYC9 4486 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 UBE2CO00762 179 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 ZNF688P0C7X2 276 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 GALR1P47211 349 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 EWSR1Q01844 656 aaKnown RBP eCLIP11.12□□□□□ -0.63
UPF1-202ENST00000594243 BAXQ07812 192 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 ZNF124Q15973 351 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 Q6ZRG5 221 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 MGST2Q99735 147 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 RNF126Q9BV68 326 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 SLC25A39Q9BZJ4 359 aaPredicted RBP11.12□□□□□ -0.63
UPF1-202ENST00000594243 DOK5Q9P104 306 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 WDR83OSQ9Y284 106 aa11.12□□□□□ -0.63
UPF1-202ENST00000594243 RPL35AP18077 110 aaKnown RBP11.11□□□□□ -0.63
UPF1-202ENST00000594243 CXCL3P19876 107 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 ID1P41134 155 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 SAMD13Q5VXD3 122 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 LEMD1Q68G75 181 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 STHQ8IWL8 128 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 OR5C1Q8NGR4 320 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 SHANK2-AS3Q9BTD1 123 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 ARV1Q9H2C2 271 aa11.11□□□□□ -0.63
UPF1-202ENST00000594243 ELOA3CA0A087WX78 387 aaPredicted RBP11.1□□□□□ -0.63
UPF1-202ENST00000594243 UBE2L5PA0A1B0GUS4 154 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 H3BRN7 92 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 MPDU1O75352 247 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 MEOX2P50222 304 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 OXA1LQ15070 435 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 PSMG4Q5JS54 123 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 Q6ZWC4 215 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 THAP6Q8TBB0 222 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 CHAC2Q8WUX2 184 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 CSTL1Q9H114 145 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 SLC25A32Q9H2D1 315 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 NBEAL2Q6ZNJ1 2754 aa11.1□□□□□ -0.63
UPF1-202ENST00000594243 COX7A2P2O60397 106 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 RPL7P18124 248 aaKnown RBP11.09□□□□□ -0.63
UPF1-202ENST00000594243 FGF7P21781 194 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 RPL29P47914 159 aaKnown RBP11.09□□□□□ -0.63
UPF1-202ENST00000594243 FCN2Q15485 313 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 PATE2Q6UY27 113 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 OR11H7Q8NGC8 314 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 160.6 ms