RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	HIST1H2BA	Q96A08	127 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	TMEM106A	Q96A25	262 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	ISOC1	Q96CN7	298 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	GALNT14	Q96FL9	552 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	TSPAN32	Q96QS1	320 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	HIST1H4G	Q99525	98 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	CCL19	Q99731	98 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	PSMG3	Q9BT73	122 aa	Predicted RBP	3	□□□□□ -1.93
LRRC28-222	ENST00000561431	GNB1L	Q9BYB4	327 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	SLIRP	Q9GZT3	109 aa	Known RBP	3	□□□□□ -1.93
LRRC28-222	ENST00000561431	LPAR5	Q9H1C0	372 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	CACYBP	Q9HB71	228 aa	Known RBP	3	□□□□□ -1.93
LRRC28-222	ENST00000561431	TAF9B	Q9HBM6	251 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	NOX3	Q9HBY0	568 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	XCL2	Q9UBD3	114 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	WASHC3	Q9Y3C0	194 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	NUP214	P35658	2090 aa	Predicted RBP	3	□□□□□ -1.93
LRRC28-222	ENST00000561431	SPG11	Q96JI7	2443 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	ZAN	Q9Y493	2812 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	VPS13C	Q709C8	3753 aa		3	□□□□□ -1.93
LRRC28-222	ENST00000561431	ZNF469	Q96JG9	3925 aa	Predicted RBP	3	□□□□□ -1.93
LRRC28-222	ENST00000561431	MTOR	P42345	2549 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	TRAV8-6	A0A0B4J262	113 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	IGHV1-18	A0A0C4DH31	117 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	CIB4	A0PJX0	185 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PLAC8L1	A1L4L8	177 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PGP	A6NDG6	321 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	C12orf77	C9JDV5	145 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431		E7EQL1	145 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431		K7EPK0	472 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	UPK2	O00526	184 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	FFAR1	O14842	300 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	RBFOX2	O43251	390 aa	Known RBP eCLIP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	ZNF207	O43670	478 aa	Known RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR2T1	O43869	369 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	NDUFS5	O43920	106 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR7C2	O60412	319 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	CA2	P00918	260 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	IGKV3-15	P01624	115 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	EIF4E	P06730	217 aa	Known RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	ASAH2B	P0C7U1	165 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	FGF6	P10767	208 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	AZU1	P20160	251 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	GABRA2	P47869	451 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	ZNF83	P51522	516 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	HLA-DRB3	P79483	266 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PRR3	P79522	188 aa	Known RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	HIST1H1A	Q02539	215 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	TMEM267	Q0VDI3	215 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431		Q1RN00	199 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PABPC1L2A	Q5JQF8	200 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	DNM1P46	Q6ZS02	220 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	KRTAP5-2	Q701N4	177 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	SSX8	Q7RTT4	187 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	H1FOO	Q8IZA3	346 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	C6orf223	Q8N319	242 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	C12orf45	Q8N5I9	185 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	CD177	Q8N6Q3	437 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	C11orf72	Q8NBR9	251 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	NUP35	Q8NFH5	326 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR1N2	Q8NGR9	330 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR10J6P	Q8NGY7	276 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR2G3	Q8NGZ4	309 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR2T4	Q8NH00	348 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PFN4	Q8NHR9	129 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	MUCL1	Q96DR8	90 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	ADAT3	Q96EY9	351 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	PHYHIPL	Q96FC7	376 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	C1orf147	Q96MC9	270 aa	Predicted RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	TP53RK	Q96S44	253 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	SMR3A	Q99954	134 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	RNF126	Q9BV68	326 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR2D2	Q9H210	308 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	RBFOX1	Q9NWB1	397 aa	Known RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	METTL1	Q9UBP6	276 aa	Known RBP	2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	SCP2D1	Q9UJQ7	156 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	SMAD5-AS1	Q9Y6J3	95 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431		V9GY05	133 aa		2.99	□□□□□ -1.93
LRRC28-222	ENST00000561431	NIPBL	Q6KC79	2804 aa	eCLIP	2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	TRAV30	A0A087WSZ9	112 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431		A0A096LNT2	108 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431		A0A0G2JRQ6	117 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	DUXB	A0A1W2PPF3	345 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	WI2-2373I1.2	A0A1W2PRP0	233 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR4C45	A6NMZ5	311 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431		C9JAW5	83 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	XKRY	O14609	159 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	OR2H2	O95918	312 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	CECR9	P0C854	216 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	ZNF14	P17017	642 aa	Predicted RBP	2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	FGF7	P21781	194 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	NUDT2	P50583	147 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	TAS2R20	P59543	309 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	RPS25	P62851	125 aa	Known RBP	2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	FABP5	Q01469	135 aa		2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	RPL18	Q07020	188 aa	Known RBP	2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	LOXL1	Q08397	574 aa	Predicted RBP	2.98	□□□□□ -1.93
LRRC28-222	ENST00000561431	ENDOG	Q14249	297 aa	Known RBP	2.98	□□□□□ -1.93

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