RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GRAMD2BQ96HH9 432 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 TRGV9Q99603 122 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 CSTL1Q9H114 145 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 C20orf85Q9H1P6 137 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 RABAC1Q9UI14 185 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 HELTA6NFD8 242 aa7.54□□□□□ -1.2
CCDC88C-206ENST00000553437 PMS2P5A8MQ11 134 aa7.54□□□□□ -1.2
CCDC88C-206ENST00000553437 H3BP45 60 aa7.54□□□□□ -1.2
CCDC88C-206ENST00000553437 OR8G2PQ6IF36 304 aa7.54□□□□□ -1.2
CCDC88C-206ENST00000553437 STRAPQ9Y3F4 350 aaKnown RBP7.54□□□□□ -1.2
CCDC88C-206ENST00000553437 HYDINQ4G0P3 5121 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 TRAV6A0A075B6T7 132 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 C7orf66A4D0T2 115 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 SNRPGP15A8MWD9 76 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 C1QBP02746 253 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 GIG44P09565 113 aaPredicted RBP7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 ZNF688P0C7X2 276 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 S100A1P23297 94 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 AP2S1P53680 142 aaPredicted RBP7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 EWSR1Q01844 656 aaKnown RBP eCLIP7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 OR2F1Q13607 317 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 IAH1Q2TAA2 248 aaPredicted RBP7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 TMEM182Q6ZP80 229 aaPredicted RBP7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 IL17DQ8TAD2 202 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 SMIM8Q96KF7 97 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 PBDC1Q9BVG4 233 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 PSENENQ9NZ42 101 aa7.53□□□□□ -1.2
CCDC88C-206ENST00000553437 A0A0J9YWU9 116 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 KNCNA6PVL3 124 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 SSSCA1O60232 199 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 FABP1P07148 127 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 LYZP61626 148 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 TMEM14EPQ6UXP3 125 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 SIGLEC15Q6ZMC9 328 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 ACOT7LQ6ZUV0 252 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 TRPT1Q86TN4 253 aaKnown RBP7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 ZNF431Q8TF32 576 aaPredicted RBP7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 SEC22CQ9BRL7 303 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 SEPSECSQ9HD40 501 aaKnown RBP7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 NRN1Q9NPD7 142 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 NUDT15Q9NV35 164 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 RCL1Q9Y2P8 373 aaKnown RBP7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 RYR1P21817 5038 aa7.52□□□□□ -1.21
CCDC88C-206ENST00000553437 CCSO14618 274 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 MBPP02686 304 aaPredicted RBP7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 H2AFB2P0C5Z0 115 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 GATA2P23769 480 aaPredicted RBP7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 NUP62P37198 522 aaPredicted RBP7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 TAS2R30P59541 319 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 C1orf194Q5T5A4 169 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 TMEM144Q7Z5S9 345 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 STHQ8IWL8 128 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 GATAD1Q8WUU5 269 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 RAB40CQ96S21 281 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 MED28Q9H204 178 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 GSKIPQ9P0R6 139 aa7.51□□□□□ -1.21
CCDC88C-206ENST00000553437 LCE6AA0A183 80 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 SOCS3O14543 225 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 PRAF2O60831 178 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 TSC22D2O75157 780 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 SCGB1D2O95969 90 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 CFDP00746 253 aaPredicted RBP7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 CA1P00915 261 aaPredicted RBP7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 METTL15P1P0C7V9 234 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 ATF4P18848 351 aaPredicted RBP7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 AKR1C1Q04828 323 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 ARL16Q0P5N6 197 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 PSMG4Q5JS54 123 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 ACTL10Q5JWF8 245 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 C12orf45Q8N5I9 185 aaPredicted RBP7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 HYLS1Q96M11 299 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 C17orf77Q96MU5 243 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 C11orf1Q9H5F2 150 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 PFDN2Q9UHV9 154 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 SLC45A2Q9UMX9 530 aa7.5□□□□□ -1.21
CCDC88C-206ENST00000553437 FNDC10F2Z333 226 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 IL5P05113 134 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 C4BPBP20851 252 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 SNRPD3P62318 126 aaKnown RBP7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 DLK1P80370 383 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 IL15RAQ13261 267 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 MORN3Q6PF18 240 aaPredicted RBP7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 GSG1LQ6UXU4 331 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 CYP2G1PQ6ZSU1 146 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 BPIFCQ8NFQ6 507 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 OR11H2Q8NH07 326 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 RARRES2Q99969 163 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 FBXL17Q9UF56 701 aa7.49□□□□□ -1.21
CCDC88C-206ENST00000553437 SMCO3A2RU48 225 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 ZNF98A6NK75 572 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 FAM25EA8MYX2 175 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 H3BMM0 161 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 K7EPK0 472 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 SPP1P10451 314 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 ORM2P19652 201 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 SMCPP49901 116 aaPredicted RBP7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 PLP1P60201 277 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 FCN2Q15485 313 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 LCE3BQ5TA77 95 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 OR8I2Q8N0Y5 310 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms