RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 AJUBAQ96IF1 538 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 MRPL32Q9BYC8 188 aaKnown RBP8.74□□□□□ -1.01
CUX1-212ENST00000547394 XKRY2A2RUG3 117 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 OR2T8A6NH00 312 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 G3V318 75 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 GGCTO75223 188 aaKnown RBP8.74□□□□□ -1.01
CUX1-212ENST00000547394 SELENOTP62341 195 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 KCNIP4Q6PIL6 250 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 HIST3H2BBQ8N257 126 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 FANCD2OSQ96PS1 177 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 TRGV9Q99603 122 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 PYGO2Q9BRQ0 406 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 PRDM13Q9H4Q3 707 aa8.74□□□□□ -1.01
CUX1-212ENST00000547394 SETD2Q9BYW2 2564 aaPredicted RBP8.74□□□□□ -1.01
CUX1-212ENST00000547394 CORTO00230 105 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 NDUFB8O95169 186 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 IL4P05112 153 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 NBEAP1P0C6P0 100 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 MRPL41Q8IXM3 137 aaKnown RBP8.73□□□□□ -1.01
CUX1-212ENST00000547394 TMUB1Q9BVT8 246 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 IGHV4-30-2A0A087WSY4 118 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 A0A1W2PRE2 83 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 NDUFA3O95167 84 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 IER3P46695 156 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 ATP5J2P56134 94 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 Q56UQ5 140 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 MS4A10Q96PG2 267 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 SLC25A39Q9BZJ4 359 aaPredicted RBP8.73□□□□□ -1.01
CUX1-212ENST00000547394 PRO1933Q9H354 126 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 HIGD1AQ9Y241 93 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 TRAPPC1Q9Y5R8 145 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 V9GYV3 84 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 MYO9AB2RTY4 2548 aa8.73□□□□□ -1.01
CUX1-212ENST00000547394 IGHV3OR16-13A0A075B7E8 117 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 IGHV7-81A0A0B4J1V7 117 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 IGHV3-74A0A0B4J1X5 117 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 PEX7O00628 323 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 COL8A1P27658 744 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 SRP14P37108 136 aaKnown RBP8.72□□□□□ -1.01
CUX1-212ENST00000547394 KIAA1644Q3SXP7 199 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 MRPL54Q6P161 138 aaKnown RBP8.72□□□□□ -1.01
CUX1-212ENST00000547394 NPBQ8NG41 125 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 TXNDC17Q9BRA2 123 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 C19orf24Q9BVV8 132 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 TENM4Q6N022 2769 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 TRAV40A0A0B4J280 105 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 OVOL3O00110 214 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 GNG7O60262 68 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 EGR2P11161 476 aaPredicted RBP8.72□□□□□ -1.01
CUX1-212ENST00000547394 GP9P14770 177 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 HIST1H1BP16401 226 aaKnown RBP8.72□□□□□ -1.01
CUX1-212ENST00000547394 FCGR2BP31994 310 aaPredicted RBP8.72□□□□□ -1.01
CUX1-212ENST00000547394 IGFL4Q6B9Z1 124 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 BAGE2Q86Y30 109 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 IGF2BP2-AS1Q96M15 143 aa8.72□□□□□ -1.01
CUX1-212ENST00000547394 ELOA3CA0A087WX78 387 aaPredicted RBP8.71□□□□□ -1.01
CUX1-212ENST00000547394 CENPVL3A0A0U1RRI6 287 aa8.71□□□□□ -1.01
CUX1-212ENST00000547394 USF2Q15853 346 aaPredicted RBP8.71□□□□□ -1.01
CUX1-212ENST00000547394 LY6EQ16553 131 aa8.71□□□□□ -1.01
CUX1-212ENST00000547394 PVRIGQ6DKI7 326 aa8.71□□□□□ -1.01
CUX1-212ENST00000547394 Q8N9W7 124 aa8.71□□□□□ -1.01
CUX1-212ENST00000547394 ZNF586Q9NXT0 402 aa8.71□□□□□ -1.01
CUX1-212ENST00000547394 IGHV3-66A0A0C4DH42 116 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 NUPR1O60356 82 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 IGHV4-38-2P0DP08 117 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 ADMP35318 185 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 RAB4BP61018 213 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 ACTL10Q5JWF8 245 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 ZNF562Q6V9R5 426 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 TMEM256Q8N2U0 113 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 Q9H3A6 140 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 SELENOKQ9Y6D0 94 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 APCP25054 2843 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 ZNF705GA8MUZ8 300 aaPredicted RBP8.71□□□□□ -1.02
CUX1-212ENST00000547394 C9JCJ5 164 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 F2Z2F3 143 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 ATP6V0E1O15342 81 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 CD33P20138 364 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 CNN1P51911 297 aaKnown RBP8.71□□□□□ -1.02
CUX1-212ENST00000547394 RPL15P61313 204 aaKnown RBP8.71□□□□□ -1.02
CUX1-212ENST00000547394 IBA57Q5T440 356 aaKnown RBP8.71□□□□□ -1.02
CUX1-212ENST00000547394 CCDC144NLQ6NUI1 221 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 C14orf144Q96I85 54 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 CHRDL1Q9BU40 450 aa8.71□□□□□ -1.02
CUX1-212ENST00000547394 IGHV3-49A0A0A0MS15 119 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 F8W735 103 aaPredicted RBP8.7□□□□□ -1.02
CUX1-212ENST00000547394 M0R3E3 92 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 LINC00322Q6ZN03 302 aaPredicted RBP8.7□□□□□ -1.02
CUX1-212ENST00000547394 Q8N6K4 173 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 OR1L6Q8NGR2 347 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 HIST1H2BLQ99880 126 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 RNF5Q99942 180 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 IL36BQ9NZH7 164 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 A0A1B0GV90 55 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 NPFFO15130 113 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 UBE2E1P51965 193 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 SSTP61278 116 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 UNQ5815/PRO19632Q6UWF5 114 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 ZNF491Q8N8L2 437 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 PACRGQ96M98 296 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms