RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 MPV17L2Q567V2 206 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 C1orf100Q5SVJ3 147 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 SLC25A34Q6PIV7 304 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 RFLNAQ6ZTI6 216 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 Q6ZVH6 145 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 FAM231DQ6ZW35 169 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 SSX8Q7RTT4 187 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ABCA7Q8IZY2 2146 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 C6orf223Q8N319 242 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 OR2T10Q8NGZ9 312 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 OR9G1Q8NH87 305 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 MRPL30Q8TCC3 161 aaKnown RBP2.31□□□□□ -2.04
USP28-210ENST00000542033 ADAT3Q96EY9 351 aaPredicted RBP2.31□□□□□ -2.04
USP28-210ENST00000542033 VSIG2Q96IQ7 327 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 BMFQ96LC9 184 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ZNF488Q96MN9 340 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ZNF702PQ9H963 129 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 CALYQ9NYX4 217 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 POLR1DQ9Y2S0 133 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 HES2Q9Y543 173 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 TSC2P49815 1807 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 NUP98P52948 1817 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ANKRD36A6QL64 1941 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 RLFQ13129 1914 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 SCN8AQ9UQD0 1980 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MYO18AQ92614 2054 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 TRAV1-1A0A0B4J248 108 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MUC21A0A0G2JKD1 596 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MUC21A0A140T8X8 626 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 LOC102725191A0A1B0GVB3 256 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 RBMY1BA6NDE4 496 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 RBMY1EA6NEQ0 496 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 C12orf77C9JDV5 145 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 M0R2P5 195 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 PLPP1O14494 284 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 SOCS1O15524 211 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 KLF7O75840 302 aaPredicted RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 SNCGO76070 127 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 DPM2O94777 84 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 CXorf1O96002 111 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MRPL3P09001 348 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 RBMY1DP0C7P1 496 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 RBMY1A1P0DJD3 496 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 GABRG2P18507 467 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 OPRK1P41145 380 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 VDAC2P45880 294 aaPredicted RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 GALR1P47211 349 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 SUB1P53999 127 aaKnown RBP eCLIP2.3□□□□□ -2.04
USP28-210ENST00000542033 TMEM258P61165 79 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 GNB2P62879 340 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 ARFRP1Q13795 201 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 IGFBP7Q16270 282 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 NCBP2-AS2Q69YL0 99 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 C12orf73Q69YU5 71 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 CYP2G1PQ6ZSU1 146 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 ATOH7Q8N100 152 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 Q8N7P7 452 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 NKAPP1Q8N9T2 125 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MDS2Q8NDY4 140 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 NUP35Q8NFH5 326 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 OR4X2Q8NGF9 303 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 OR5D14Q8NGL3 314 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 CYYR1Q96J86 154 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 SCGB3A2Q96PL1 93 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 LINC01587Q99440 93 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 SFXN3Q9BWM7 321 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 IMUPQ9GZP8 106 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 TMEM222Q9H0R3 208 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 CST11Q9H112 138 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 VSIRQ9H7M9 311 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 PDFQ9HBH1 243 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 MANBALQ9NQG1 85 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 HRASLS2Q9NWW9 162 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 TVP23BQ9NYZ1 205 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 RCL1Q9Y2P8 373 aaKnown RBP2.3□□□□□ -2.04
USP28-210ENST00000542033 TRAPPC1Q9Y5R8 145 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 INSIG2Q9Y5U4 225 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 DSPPQ9NZW4 1301 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 NRAPQ86VF7 1730 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 NCKAP5O14513 1909 aa2.3□□□□□ -2.04
USP28-210ENST00000542033 BRCA1P38398 1863 aaKnown RBP2.29□□□□□ -2.04
USP28-210ENST00000542033 STRCP1A6NGW2 1772 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 A0A0G2JMZ2 1700 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 LRRC37A2A6NM11 1700 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 LRRC37AA6NMS7 1700 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 WDR90Q96KV7 1748 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 NHSQ6T4R5 1651 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 TMED7-TICAM2A0A0A6YYA0 188 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 TSPAN11A1L157 253 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 RIIAD1A6NNX1 92 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 LYRM9A8MSI8 78 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 ZNF736B4DX44 427 aaPredicted RBP2.29□□□□□ -2.04
USP28-210ENST00000542033 SYS1-DBNDD2H3BUS1 97 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 OVOL1O14753 267 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 ZNF737O75373 536 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 APOMO95445 188 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 IGHG2P01859 326 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 IGHMP01871 453 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 MT-ND6P03923 174 aa2.29□□□□□ -2.04
USP28-210ENST00000542033 MT-ATP8P03928 68 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms