RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 DOCK9Q9BZ29 2069 aa10.97□□□□□ -0.65
TCOF1-214ENST00000515035 RALGAPA2Q2PPJ7 1873 aa10.97□□□□□ -0.65
TCOF1-214ENST00000515035 IGLV3-12A0A075B6K2 115 aa10.97□□□□□ -0.65
TCOF1-214ENST00000515035 LGALS1P09382 135 aaKnown RBP10.97□□□□□ -0.65
TCOF1-214ENST00000515035 EXOC3-AS1Q8N2X6 119 aa10.97□□□□□ -0.65
TCOF1-214ENST00000515035 CNOT1A5YKK6 2376 aaKnown RBP10.97□□□□□ -0.65
TCOF1-214ENST00000515035 CREBBPQ92793 2442 aa10.97□□□□□ -0.65
TCOF1-214ENST00000515035 NPC2P61916 151 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 FOXF2Q12947 444 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 SRSF7Q16629 238 aaKnown RBP eCLIP10.96□□□□□ -0.65
TCOF1-214ENST00000515035 CRPP02741 224 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 NPSP0C0P6 89 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 ZFP36L1Q07352 338 aaKnown RBP10.96□□□□□ -0.65
TCOF1-214ENST00000515035 TMEM86BQ8N661 226 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 LINC01560Q8TB33 94 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 CHAC1Q9BUX1 264 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 SPTBN2O15020 2390 aa10.96□□□□□ -0.65
TCOF1-214ENST00000515035 FAM166AQ6J272 317 aa10.96□□□□□ -0.66
TCOF1-214ENST00000515035 ABCA7Q8IZY2 2146 aa10.96□□□□□ -0.66
TCOF1-214ENST00000515035 ZNF48Q96MX3 618 aaPredicted RBP10.96□□□□□ -0.66
TCOF1-214ENST00000515035 SCRT1Q9BWW7 348 aa10.96□□□□□ -0.66
TCOF1-214ENST00000515035 C17orf100A8MU93 164 aa10.96□□□□□ -0.66
TCOF1-214ENST00000515035 CD59P13987 128 aa10.96□□□□□ -0.66
TCOF1-214ENST00000515035 SMAD7O15105 426 aaKnown RBP10.95□□□□□ -0.66
TCOF1-214ENST00000515035 PRB3Q04118 309 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-214ENST00000515035 C10orf55Q5SWW7 151 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 IGKV2-40A0A087WW87 121 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-214ENST00000515035 IGKV2D-40P01614 121 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-214ENST00000515035 MALP21145 153 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 MST1LQ2TV78 715 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 ZIC4Q8N9L1 334 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 PLEKHB2Q96CS7 222 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 CCL19Q99731 98 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 TMEM133Q9H2Q1 129 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 GATD1Q8NB37 220 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 RSPO3Q9BXY4 272 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-214ENST00000515035 LYL1P12980 280 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 CDKN1AP38936 164 aa10.95□□□□□ -0.66
TCOF1-214ENST00000515035 FAM231BA6NCW3 169 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 TMEM8BA6NDV4 472 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 CRYGSP22914 178 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 LINC00158P58513 81 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 RHOGP84095 191 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 LOC102723996A0A087X1L8 192 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 CD24P25063 80 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 PHLDA1Q8WV24 401 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-214ENST00000515035 MRPS18CQ9Y3D5 142 aaKnown RBP10.94□□□□□ -0.66
TCOF1-214ENST00000515035 BSPH1Q075Z2 132 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 ASCL4Q6XD76 172 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 NTN3O00634 580 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-214ENST00000515035 LHX2P50458 406 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 Q0VG73 95 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 SPSB3Q6PJ21 355 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 TMEM167AQ8TBQ9 72 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 PSME4Q14997 1843 aa10.94□□□□□ -0.66
TCOF1-214ENST00000515035 A0A1B0GUS0 222 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 C9JAW5 83 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 PLSCR4Q9NRQ2 329 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 TMEM158Q8WZ71 300 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 LRRK1Q38SD2 2015 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 IGKV1-27A0A075B6S5 117 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 STPG4Q8N801 248 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 TMEM190Q8WZ59 177 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 CITED1Q99966 193 aa10.93□□□□□ -0.66
TCOF1-214ENST00000515035 PDCD11Q14690 1871 aaKnown RBP10.93□□□□□ -0.66
TCOF1-214ENST00000515035 FGFBP3Q8TAT2 258 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 KLF12Q9Y4X4 402 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 TRAV8-3A0A0A6YYJ7 113 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 DUSP14O95147 198 aaKnown RBP10.92□□□□□ -0.66
TCOF1-214ENST00000515035 MYOD1P15172 320 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 SLC25A39Q9BZJ4 359 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-214ENST00000515035 LCTP09848 1927 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 ITGB1BP1O14713 200 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 PFN1P07737 140 aaKnown RBP10.92□□□□□ -0.66
TCOF1-214ENST00000515035 NTF4P34130 210 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 PATJQ8NI35 1801 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 TOMM40O96008 361 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 CFHR1Q03591 330 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 SPTAN1Q13813 2472 aaKnown RBP10.92□□□□□ -0.66
TCOF1-214ENST00000515035 NYNRINQ9P2P1 1898 aaKnown RBP10.92□□□□□ -0.66
TCOF1-214ENST00000515035 OVOL1O14753 267 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 SPACA3Q8IXA5 215 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 SPANXA1Q9NS26 97 aa10.92□□□□□ -0.66
TCOF1-214ENST00000515035 IGLC2P0DOY2 106 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 IGLC3P0DOY3 106 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 PF4P02776 101 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 ZNF876PQ49A33 203 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 S100A7L2Q5SY68 101 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 C9orf153Q5TBE3 101 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 RPUSD1Q9UJJ7 312 aaKnown RBP10.91□□□□□ -0.66
TCOF1-214ENST00000515035 TSSC4Q9Y5U2 329 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-214ENST00000515035 KIAA2026Q5HYC2 2103 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 TRGV11A0A075B6L2 103 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 IGLV3-32A0A0A0MS00 114 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 TRAV3A0A0B4J244 114 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 PAX4O43316 350 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 DEFB104AQ8WTQ1 72 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 LCNL1Q6ZST4 164 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 AMN1Q8IY45 258 aa10.91□□□□□ -0.66
TCOF1-214ENST00000515035 NEU4Q8WWR8 484 aaPredicted RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms