RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 LINC00299Q6ZSB3 139 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM144Q7Z5S9 345 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM217Q8N7C4 229 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 BPIFCQ8NFQ6 507 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 C11orf68Q9H3H3 251 aaKnown RBP13.07□□□□□ -0.32
UPF3A-203ENST00000474056 FBXL17Q9UF56 701 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 SOCS3O14543 225 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 DEFB4AO15263 64 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 JTBO76095 146 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 CFDP00746 253 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-203ENST00000474056 METTL15P1P0C7V9 234 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 RRAS2P62070 204 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-203ENST00000474056 CLEC5AQ9NY25 188 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 TBC1D24Q9ULP9 559 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 NUPR2A6NF83 97 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 A6NHS1 94 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 MBPP02686 304 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ORM2P19652 201 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 DEFB1P60022 68 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM41BQ5BJD5 291 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 OR8I2Q8N0Y5 310 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF431Q8TF32 576 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-203ENST00000474056 S100ZQ8WXG8 99 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 SLC25A22Q9H936 323 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF98A6NK75 572 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 H3BMM0 161 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 TSC22D2O75157 780 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 H2AFB2P0C5Z0 115 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 TAS2R30P59541 319 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 DLK1P80370 383 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 GDF5OSQ5U4N7 250 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 CYP2G1PQ6ZSU1 146 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 Q8NAQ8 132 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 OR1B1Q8NGR6 318 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 SLC25A32Q9H2D1 315 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 SLC45A2Q9UMX9 530 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 FAM240BA0A1B0GVZ2 78 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C7orf66A4D0T2 115 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 FAM25EA8MYX2 175 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 HLA-DRB4P13762 266 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 ID1P41134 155 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 PSMB3P49720 205 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 CEMP1Q6PRD7 247 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C12orf45Q8N5I9 185 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 CSNK1G2-AS1Q8NCQ2 148 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 OR10P1Q8NGE3 313 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C17orf77Q96MU5 243 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 LINC00052Q96N35 136 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 DOK5Q9P104 306 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 LSM5Q9Y4Y9 91 aaKnown RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 HLA-DRB4X5D2U9 266 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF705EA8MWA4 302 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-203ENST00000474056 IL5P05113 134 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 NANOS2P60321 138 aaKnown RBP13.02□□□□□ -0.33
UPF3A-203ENST00000474056 ARL16Q0P5N6 197 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 ZNF846Q147U1 533 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 TMEM147Q9BVK8 224 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 X6R8D5 127 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 IGHV4-28A0A0C4DH34 117 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 C5orf51A6NDU8 294 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 H3BRN7 92 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 K7EPK0 472 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 GALR1P47211 349 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 ASAH1Q13510 395 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 MZT2BQ6NZ67 158 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 C11orf45Q8TAV5 145 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 PHLDA1Q8WV24 401 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-203ENST00000474056 SCRT1Q9BWW7 348 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 SAV1Q9H4B6 383 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-203ENST00000474056 NPVFQ9HCQ7 196 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 MGAT4CQ9UBM8 478 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 FNDC10F2Z333 226 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 ISLRO14498 428 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 LINC00869P0C866 280 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1A1P0DJD3 496 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1CP0DJD4 496 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 NUTF2P61970 127 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1FQ15415 496 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 FOXI2Q6ZQN5 318 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 C20orf173Q96LM9 149 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 RSG1Q9BU20 258 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 SLC25A39Q9BZJ4 359 aaPredicted RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 XCL2Q9UBD3 114 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 EPPK1P58107 5090 aaKnown RBP12.99□□□□□ -0.33
UPF3A-203ENST00000474056 L7N2F9 121 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 IGKV3-20P01619 116 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 MIFP14174 115 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 MEOX2P50222 304 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 PLP1P60201 277 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SELENOTP62341 195 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 VAMP2P63027 116 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SLC38A11Q08AI6 406 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 TEPPQ6URK8 271 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 LINC00476Q8WZB0 136 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C16orf92Q96LL3 132 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C2orf50Q96LR7 162 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SHANK2-AS3Q9BTD1 123 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C11orf1Q9H5F2 150 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 PTTG2Q9NZH5 202 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms