RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 LINC00312Q9Y6C7 94 aa11.02□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TRAV12-1A0A0B4J245 112 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DANCRP0C864 163 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C1orf159Q96HA4 380 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 H3BUX3 64 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 COX5BP10606 129 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GAGE2BQ13066 116 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C15orf32Q32M92 178 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 FAM181AQ8N9Y4 354 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 IL36BQ9NZH7 164 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TRGV11A0A075B6L2 103 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TRBV5-5A0A0J9YX44 114 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 LOC105371267A0A1B0GV96 52 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TMEM105Q8N8V8 129 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TMEM133Q9H2Q1 129 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DPM2O94777 84 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TMEM30BQ3MIR4 351 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 MPV17L2Q567V2 206 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 NIT1Q86X76 327 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ASCL2Q99929 193 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GDF15Q99988 308 aa11.02□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GCM2O75603 506 aaPredicted RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 VMO1Q7Z5L0 202 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 CACNG8Q8WXS5 425 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 H3BUT2 72 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 NDUFS8O00217 210 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 RPL36AP83881 106 aaKnown RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GAGE2AQ6NT46 116 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 CIARTQ8N365 385 aaPredicted RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 RPL36ALQ969Q0 106 aaKnown RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C1QTNF4Q9BXJ3 329 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 IGKV1D-43A0A0B4J1Z2 117 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DAD1P61803 113 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 MUC6Q6W4X9 2439 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SRRM4A7MD48 611 aaKnown RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TGFBR3LH3BV60 316 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GAS1P54826 345 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ZNF876PQ49A33 203 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C14orf132Q9NPU4 83 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 CHTOPQ9Y3Y2 248 aaKnown RBP11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 OVOL2Q9BRP0 275 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DEPPQ9NTK1 212 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 FRMPD3Q5JV73 1810 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TEX22C9J3V5 150 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 NMBP08949 121 aa11.01□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TRAV13-1A0A0B4J241 112 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SEC11AP67812 179 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 WDYHV1Q96HA8 205 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 STRCP1A6NGW2 1772 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TRPM3Q9HCF6 1732 aaPredicted RBP11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 FAM90A9PA6NNJ1 464 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 CFHR5Q9BXR6 569 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SLC25A39Q9BZJ4 359 aaPredicted RBP11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 FOXL1Q12952 345 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 Q5BKY6 102 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 FOXF2Q12947 444 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PPP1R3EQ9H7J1 279 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 NYNRINQ9P2P1 1898 aaKnown RBP11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 RBBP6Q7Z6E9 1792 aaKnown RBP11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 TRBV5-3A0A0A0MS03 114 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PSG1P11464 419 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ATG2AQ2TAZ0 1938 aa11□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 IRF3Q14653 427 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 A8MWV9 139 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 GPR179Q6PRD1 2367 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 MLNRO43193 412 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 MRPS18AQ9NVS2 196 aaKnown RBP10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ARID2Q68CP9 1835 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PIN1P1O15428 100 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 IFITM3Q01628 133 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 KLF5Q13887 457 aaPredicted RBP10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ORMDL2Q53FV1 153 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PMS2P5A8MQ11 134 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 CRLF1O75462 422 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SLC25A16P16260 332 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 EXOC3-AS1Q8N2X6 119 aa10.99□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 EML5Q05BV3 1969 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PSPNO60542 156 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 LCTP09848 1927 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ZNF708P17019 499 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 IFITM2Q01629 132 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ADAMTSL3P82987 1691 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 KLF17Q5JT82 389 aaPredicted RBP10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C1orf100Q5SVJ3 147 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SPRR3Q9UBC9 169 aa10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ZNF672Q499Z4 452 aaPredicted RBP10.98□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DMRT1Q9Y5R6 373 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 RASL11AQ6T310 242 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 BRWD3Q6RI45 1802 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 C15orf61A6NNL5 157 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 PRTN3P24158 256 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 A0A0A6YYD4 124 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 ZNF124Q15973 351 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 MORN2Q502X0 79 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 DMRTC2Q8IXT2 367 aaPredicted RBP10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SOCS3O14543 225 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SELLP14151 372 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 SCRT1Q9BWW7 348 aa10.97□□□□□ -0.65
NPHP3-ACAD11-201ENST00000471702 RNF223E7ERA6 249 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms