RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RBM14Q96PK6 669 aaKnown RBP10.69□□□□□ -0.7
VPS54-203ENST00000409558 TBL2Q9Y4P3 447 aaKnown RBP10.69□□□□□ -0.7
VPS54-203ENST00000409558 TPPP2P59282 170 aa10.69□□□□□ -0.7
VPS54-203ENST00000409558 Q56UQ5 140 aa10.69□□□□□ -0.7
VPS54-203ENST00000409558 ZNF329Q86UD4 541 aa10.69□□□□□ -0.7
VPS54-203ENST00000409558 LINC00322Q6ZN03 302 aaPredicted RBP10.68□□□□□ -0.7
VPS54-203ENST00000409558 NEU1Q99519 415 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 APCSP02743 223 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 PERPQ96FX8 193 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 Q9H3A6 140 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 ZNF207O43670 478 aaKnown RBP10.68□□□□□ -0.7
VPS54-203ENST00000409558 HTR1DP28221 377 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 ECSCRQ19T08 205 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 CYB5R2Q6BCY4 276 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 ZNF600Q6ZNG1 722 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 CACNG8Q8WXS5 425 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 FXYD5Q96DB9 178 aa10.68□□□□□ -0.7
VPS54-203ENST00000409558 POLR3KQ9Y2Y1 108 aaPredicted RBP10.68□□□□□ -0.7
VPS54-203ENST00000409558 CDC42EP3Q9UKI2 254 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 OR2J3O76001 311 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 IGLV2-8P01709 118 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 AMY1AP04745 511 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 ZNF841Q6ZN19 808 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 TIMD4Q96H15 378 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 NOL4LQ96MY1 436 aaPredicted RBP10.67□□□□□ -0.7
VPS54-203ENST00000409558 TYMSP04818 313 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 MAJINQ3KP22 176 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 HIGD1AQ9Y241 93 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 A0A1W2PRE2 83 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 CD99P14209 185 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 LGALS7P47929 136 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 DLX6P56179 175 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 TMUB1Q9BVT8 246 aa10.67□□□□□ -0.7
VPS54-203ENST00000409558 GNG7O60262 68 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 HSBP1O75506 76 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 COL8A1P27658 744 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 UQCRFS1P47985 274 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 NUP35Q8NFH5 326 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 PMCHL2Q9BQD1 86 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 TXNDC17Q9BRA2 123 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 RAB1BQ9H0U4 201 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 EPDR1Q9UM22 224 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 MYO9AB2RTY4 2548 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 OR2T8A6NH00 312 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 LINC00310P59036 64 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 LIPFP07098 398 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 TP73-AS1Q9UF72 201 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 FBXL7Q9UJT9 491 aa10.66□□□□□ -0.7
VPS54-203ENST00000409558 LOC105371242A0A075B767 164 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 BMPR1BO00238 502 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 COMPP49747 757 aaPredicted RBP10.65□□□□□ -0.7
VPS54-203ENST00000409558 ADORA2A-AS1P86434 159 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 RNASEH2CQ8TDP1 164 aaKnown RBP10.65□□□□□ -0.7
VPS54-203ENST00000409558 CLEC5AQ9NY25 188 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 IGKV3-7A0A075B6H7 116 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 C9JCJ5 164 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 FXYD7P58549 80 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 DIRC3C9JPN6 131 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 J3KRW8 73 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 P01737 135 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 C3orf36Q3SXR2 165 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 REC114Q7Z4M0 266 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 C11orf52Q96A22 123 aa10.65□□□□□ -0.7
VPS54-203ENST00000409558 A8MWP6 167 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 GCGP01275 180 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 CX3CL1P78423 397 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 TMEM136Q6ZRR5 245 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 DYNAPQ8N1N2 210 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 VAMP8Q9BV40 100 aa10.65□□□□□ -0.71
VPS54-203ENST00000409558 LINC00574Q9H8X3 128 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 JKAMPQ9P055 326 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 SERTM2A0A1B0GWG4 89 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 IGLV1-47P01700 117 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 CA7P43166 264 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 MRGPRG-AS1Q2M3A8 158 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 ZNF596Q8TC21 504 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 NRN1Q9NPD7 142 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 A0A1W2PPR1 153 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 TFPI2P48307 235 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 GDF5OSQ5U4N7 250 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 MRPL32Q9BYC8 188 aaKnown RBP10.64□□□□□ -0.71
VPS54-203ENST00000409558 NCOR1P1Q9H4R4 102 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 ZNF586Q9NXT0 402 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 DPM3Q9P2X0 92 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 EPG5Q9HCE0 2579 aa10.64□□□□□ -0.71
VPS54-203ENST00000409558 CELSR2Q9HCU4 2923 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 BRS3P32247 399 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 SELENOTP62341 195 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 TMEM219Q86XT9 240 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 SLC25A39Q9BZJ4 359 aaPredicted RBP10.63□□□□□ -0.71
VPS54-203ENST00000409558 F11RQ9Y624 299 aaKnown RBP10.63□□□□□ -0.71
VPS54-203ENST00000409558 ITPR1Q14643 2758 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 ETFRF1Q6IPR1 90 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 CFAP46Q8IYW2 2715 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 PSMB11A5LHX3 300 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 BORCS7Q96B45 105 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 IGF2BP2-AS1Q96M15 143 aa10.63□□□□□ -0.71
VPS54-203ENST00000409558 LINC00469Q8N7U9 141 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 OSTCQ9NRP0 149 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 VWC2LB2RUY7 222 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms