RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 TRGC2P03986 189 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 COL8A1P27658 744 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 SNRPEP62304 92 aaKnown RBP13□□□□□ -0.33
CCDC40-201ENST00000269318 OR10G8Q8NGN5 311 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 VN1R17PQ8TDU5 208 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 TXN2Q99757 166 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 CDC42EP3Q9UKI2 254 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 ZFHX3Q15911 3703 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 CELSR1Q9NYQ6 3014 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 TRBV9A0A0B4J1U6 114 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 G3V318 75 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 IGHV3-23P01764 117 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 TAS2R60P59551 318 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 USF2Q15853 346 aaPredicted RBP13□□□□□ -0.33
CCDC40-201ENST00000269318 LINC00479Q96M42 142 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 CTSGP08311 255 aa12.99□□□□□ -0.33
CCDC40-201ENST00000269318 FOXL1Q12952 345 aa12.99□□□□□ -0.33
CCDC40-201ENST00000269318 LINC01356Q8N9X3 169 aa12.99□□□□□ -0.33
CCDC40-201ENST00000269318 SRD5A3Q9H8P0 318 aa12.99□□□□□ -0.33
CCDC40-201ENST00000269318 A0A1W2PPQ1 181 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 GCGP01275 180 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 S100A6P06703 90 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H1EP10412 219 aaKnown RBP12.98□□□□□ -0.33
CCDC40-201ENST00000269318 OR5I1Q13606 314 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 C19orf54Q5BKX5 351 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 KCNIP4Q6PIL6 250 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 BCL6BQ8N143 479 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-201ENST00000269318 ZNF586Q9NXT0 402 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 EPDR1Q9UM22 224 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 PGPA6NDG6 321 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 OR2T8A6NH00 312 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 TYMSP04818 313 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 CNN1P51911 297 aaKnown RBP12.98□□□□□ -0.33
CCDC40-201ENST00000269318 CRIP2P52943 208 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-201ENST00000269318 FAM3BP58499 235 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-201ENST00000269318 GNG5P63218 68 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 C15orf32Q32M92 178 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 ZNF502Q8TBZ5 544 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 ZNF414Q96IQ9 312 aa12.98□□□□□ -0.33
CCDC40-201ENST00000269318 A6NDX4 124 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 H3BTX0 84 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 UBE2CO00762 179 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 MRPS12O15235 138 aaKnown RBP12.97□□□□□ -0.33
CCDC40-201ENST00000269318 ADMP35318 185 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 RHOGP84095 191 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 CHRDL1Q9BU40 450 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 Q9H3A6 140 aa12.97□□□□□ -0.33
CCDC40-201ENST00000269318 H3BUX3 64 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 AP4M1O00189 453 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BKO60814 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 SLC25A5P05141 298 aaKnown RBP12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BJP06899 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 IGLC2P0DOY2 106 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BOP23527 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BBP33778 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BDP58876 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BCP62807 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST2H2BEQ16778 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BHQ93079 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BNQ99877 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H2BMQ99879 126 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 KLF12Q9Y4X4 402 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 V9GYV3 84 aa12.96□□□□□ -0.33
CCDC40-201ENST00000269318 ZNF98A6NK75 572 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 PPP5D1E7EU14 171 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 ISLRO14498 428 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 ERVFC1-1P60608 527 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 TMEM183BQ1AE95 376 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 BPIFA4PQ86YQ2 179 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 C5orf17Q8NAS9 161 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 FRZBQ92765 325 aa12.96□□□□□ -0.34
CCDC40-201ENST00000269318 BEX4Q9NWD9 120 aaPredicted RBP12.96□□□□□ -0.34
CCDC40-201ENST00000269318 MAP1AP78559 2803 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-201ENST00000269318 TRAV34A0A0B4J273 112 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 SLC17A3O00476 420 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 SCGB2A1O75556 95 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 LOXL1Q08397 574 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-201ENST00000269318 ATG101Q9BSB4 218 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 OTORQ9NRC9 128 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 OSTCQ9NRP0 149 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 IL36BQ9NZH7 164 aa12.95□□□□□ -0.34
CCDC40-201ENST00000269318 ANKRD17O75179 2603 aaKnown RBP12.94□□□□□ -0.34
CCDC40-201ENST00000269318 TRBV19A0A075B6N1 114 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 TRAV41A0A0B4J266 112 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 FABP9Q0Z7S8 132 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 LY6EQ16553 131 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 DEFB113Q30KQ7 82 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.94□□□□□ -0.344e-7■■■■□ 19.8
CCDC40-201ENST00000269318 TRGC1P0CF51 173 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 S100A7AQ86SG5 101 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 LRRC75A-AS1Q8N1F1 130 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 CCDC140Q96MF4 163 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 RNASE7Q9H1E1 156 aaKnown RBP12.94□□□□□ -0.34
CCDC40-201ENST00000269318 RNF24Q9Y225 148 aa12.94□□□□□ -0.34
CCDC40-201ENST00000269318 J3QLI3 93 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 TCRAP04437 139 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 IGF1P05019 195 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 GPR183P32249 361 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 BAGE2Q86Y30 109 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 238.2 ms