RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	ATM	Q13315	3056 aa		13.77	□□□□□ -0.21
VPS53-215	ENST00000573028	VWC2L	B2RUY7	222 aa		13.77	□□□□□ -0.21
VPS53-215	ENST00000573028	TMEM177	Q53S58	311 aa		13.77	□□□□□ -0.21
VPS53-215	ENST00000573028	ZNF318	Q5VUA4	2279 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	APC2	O95996	2303 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	HIST1H1E	P10412	219 aa	Known RBP	13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	KIR3DL3	Q8N743	410 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	TMEM167A	Q8TBQ9	72 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	ST6GALNAC6	Q969X2	333 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	EBLN2	Q6P2I7	272 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	TMEM108	Q6UXF1	575 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	VSTM2A	Q8TAG5	236 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	PGLYRP4	Q96LB8	373 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	LINC00574	Q9H8X3	128 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	EPDR1	Q9UM22	224 aa		13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS53-215	ENST00000573028	PPIAL4E	A0A075B759	164 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	PPIAL4D	F5H284	164 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	NDUFB3	O43676	98 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	FAM87A	P0C7U9	286 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	PPIAL4F	P0DN26	164 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	TP73-AS1	Q9UF72	201 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	FAM181B	A6NEQ2	426 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	C17orf100	A8MU93	164 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	C22orf46	C9J442	243 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028		H0Y8G0	127 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	TEX36	Q5VZQ5	186 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	KLHDC1	Q8N7A1	406 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	MBD6	Q96DN6	1003 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	OR8B2	Q96RD0	313 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	WASHC3	Q9Y3C0	194 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	NBEAP1	P0C6P0	100 aa		13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	LINC00322	Q6ZN03	302 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	ALKBH7	Q9BT30	221 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS53-215	ENST00000573028	ADIPOQ	Q15848	244 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	VMA21	Q3ZAQ7	101 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	PTPRZ1	P23471	2315 aa	Predicted RBP	13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	MALRD1	Q5VYJ5	2156 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	TRAV8-1	A0A0A6YYK1	113 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	CNTFR	P26992	372 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	MRPL52	Q86TS9	123 aa	Known RBP	13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	PERP	Q96FX8	193 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	ASCL2	Q99929	193 aa		13.74	□□□□□ -0.21
VPS53-215	ENST00000573028	BSPH1	Q075Z2	132 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	AKAP13	Q12802	2813 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	LRRC10	Q5BKY1	277 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	MRPL27	Q9P0M9	148 aa	Known RBP	13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	UNQ5815/PRO19632	Q6UWF5	114 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	FAM231D	Q6ZW35	169 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	DAZAP1	Q96EP5	407 aa	Known RBP	13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	ZFP30	Q9Y2G7	519 aa		13.73	□□□□□ -0.21
VPS53-215	ENST00000573028	IGLV2-23	P01705	113 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028		P01737	135 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	MEF2C	Q06413	473 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	BTF3	P20290	206 aa	Known RBP	13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	TSPO	P30536	169 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	TMEM30B	Q3MIR4	351 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	C22orf15	Q8WYQ4	148 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	GPR82	Q96P67	336 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	MCRIP2	Q9BUT9	160 aa	Known RBP	13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	ABCA4	P78363	2273 aa		13.72	□□□□□ -0.21
VPS53-215	ENST00000573028	LYZ	P61626	148 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	C21orf62-AS1	Q17RA5	79 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	SSX8	Q7RTT4	187 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	TMEM186	Q96B77	213 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	NBAS	A2RRP1	2371 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	SPTA1	P02549	2419 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	IGLL1	P15814	213 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	ZNF138	P52744	262 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	GAGE1	Q13065	139 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	ERAS	Q7Z444	233 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	CHRDL1	Q9BU40	450 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	CTSZ	Q9UBR2	303 aa		13.71	□□□□□ -0.21
VPS53-215	ENST00000573028	NDUFB8	O95169	186 aa		13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	LINC00173	Q6ZV60	143 aa		13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	SPATA12	Q7Z6I5	190 aa		13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	WIPF2	Q8TF74	440 aa	Predicted RBP	13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	RPP21	Q9H633	154 aa	Known RBP	13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	DYNLRB1	Q9NP97	96 aa		13.71	□□□□□ -0.22
VPS53-215	ENST00000573028	C16orf97	H3BN30	126 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	TMEM178B	H3BS89	294 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	FSTL3	O95633	263 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	CSN3	P07498	182 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	HBB	P68871	147 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028		Q71RC1	249 aa	Predicted RBP	13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	PIP4P1	Q86T03	277 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	RPL27A	P46776	148 aa	Known RBP	13.7	□□□□□ -0.22
VPS53-215	ENST00000573028		Q9H3A6	140 aa		13.7	□□□□□ -0.22
VPS53-215	ENST00000573028	THAP8	Q8NA92	274 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	GTSF1	Q8WW33	167 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	TRAV9-2	A0A087WT02	112 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	CIART	Q8N365	385 aa	Predicted RBP	13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	IGLC7	A0M8Q6	106 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028		A8MWL6	223 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	RASL11A	Q6T310	242 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	PRNT	Q86SH4	94 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	EXOC3-AS1	Q8N2X6	119 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	C7orf69	Q9H7B7	122 aa		13.69	□□□□□ -0.22
VPS53-215	ENST00000573028	CUL9	Q8IWT3	2517 aa		13.68	□□□□□ -0.22
VPS53-215	ENST00000573028	CHEK1	O14757	476 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms