RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 RPS11P62280 158 aaKnown RBP eCLIP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 HAMPP81172 84 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 HTD2P86397 168 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 REG3AQ06141 175 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 HMGN3Q15651 99 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 DEFB114Q30KQ6 69 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 C6orf183Q5T699 404 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 ELP2Q6IA86 826 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 LCN12Q6JVE5 192 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 FAM71F2Q6NXP2 309 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 KCNIP4Q6PIL6 250 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 CEMP1Q6PRD7 247 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 CLEC19AQ6UXS0 136 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 LINC00322Q6ZN03 302 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 SSX9Q7RTT3 188 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 Q8N402 240 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 STX19Q8N4C7 294 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 CBR4Q8N4T8 237 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 FAM24BQ8N5W8 94 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 LINC00311Q8N616 119 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 ZNF645Q8N7E2 425 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 PXT1Q8NFP0 134 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 STXBP6Q8NFX7 210 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 FLYWCH2Q96CP2 140 aaKnown RBP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 S100A13Q99584 98 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 GGTLC1Q9BX51 225 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 GON7Q9BXV9 100 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 GABARAPL3Q9BY60 117 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 PRRG3Q9BZD7 231 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 CST11Q9H112 138 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 LINC00574Q9H8X3 128 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 SLC35D1Q9NTN3 355 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 PEF1Q9UBV8 284 aaKnown RBP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 ZMAT5Q9UDW3 170 aaKnown RBP1.64□□□□□ -2.15
SCFD1-219ENST00000556413 AK3Q9UIJ7 227 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 WASHC3Q9Y3C0 194 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 NUBP2Q9Y5Y2 271 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 KIAA2026Q5HYC2 2103 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 FAT1Q14517 4588 aa1.64□□□□□ -2.15
SCFD1-219ENST00000556413 VPS13BQ7Z7G8 4022 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 PKD1P98161 4303 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 LOC102724200A0A096LPH7 203 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 TRAV3A0A0B4J244 114 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 TMEM212A6NML5 194 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 KNCNA6PVL3 124 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 H0Y980 276 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ORC5O43913 435 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 PDCD6O75340 191 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 WBP4O75554 376 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 DIRAS3O95661 229 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 APOA2P02652 100 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ISG15P05161 165 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RBMY1A1P0DJD3 496 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 SAA1P0DJI8 122 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 GTF2F2P13984 249 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 CRHBPP24387 322 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ZNF137PP52743 207 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 FXYD7P58549 80 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 DEFB1P60022 68 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RPL30P62888 115 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 HLA-DRB3P79483 266 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ATP5G2Q06055 141 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 MED21Q13503 144 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RBMY1FQ15415 496 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 SPINK9Q5DT21 86 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RBM48Q5RL73 367 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 HES5Q5TA89 166 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ZNF660Q6AZW8 331 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ACBD7Q8N6N7 88 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 UBAC2Q8NBM4 344 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 OR10A7Q8NGE5 316 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 OR52M1Q8NGK5 317 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 OR5D14Q8NGL3 314 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 CYGBQ8WWM9 190 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 GHSRQ92847 366 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 TMEM203Q969S6 136 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 GALMQ96C23 342 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 C10orf35Q96D05 121 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ARHGAP5-AS1Q96IT6 56 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 PGLYRP3Q96LB9 341 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 SLC29A1Q99808 456 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 DCUN1D5Q9BTE7 237 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 C20orf24Q9BUV8 137 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RNF167Q9H6Y7 350 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 ZNF430Q9H8G1 570 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 TMEM138Q9NPI0 162 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 SLC2A8Q9NY64 477 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 KCNIP1Q9NZI2 227 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 JPT1Q9UK76 154 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 AK6Q9Y3D8 172 aaKnown RBP1.63□□□□□ -2.15
SCFD1-219ENST00000556413 AP4S1Q9Y587 144 aa1.63□□□□□ -2.15
SCFD1-219ENST00000556413 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.62□□□□□ -2.15
SCFD1-219ENST00000556413 IGKV1D-13A0A0B4J2D9 117 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 NUPR2A6NF83 97 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 OR2T8A6NH00 312 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 OR5H14A6NHG9 310 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 TRDCB7Z8K6 153 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 RAB29O14966 203 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 AGPAT2O15120 278 aa1.62□□□□□ -2.15
SCFD1-219ENST00000556413 SLC22A1O15245 554 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 260 ms