RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GBGT1Q8N5D6 347 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 ACY3Q96HD9 319 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 METTL26Q96S19 204 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 C7orf50Q9BRJ6 194 aaKnown RBP7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 OVOL2Q9BRP0 275 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 MS4A6AQ9H2W1 248 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 IGKV1D-37A0A075B6S9 117 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 TRAV2A0A0B4J234 112 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 FAM240BA0A1B0GVZ2 78 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 A0A1W2PS18 150 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 ADAP1O75689 374 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 TOMM40O96008 361 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 IFNA4P05014 189 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 OR4E1P0C645 316 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 IAPPP10997 89 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 ANXA7P20073 488 aaKnown RBP7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 GPX4P36969 197 aaPredicted RBP7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 CMC4P56277 68 aaPredicted RBP7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 DHRS2Q13268 280 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 GAMTQ14353 236 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 ZNF124Q15973 351 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 NDUFA5Q16718 116 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 ZFP69Q49AA0 526 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 FAM24BQ8N5W8 94 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 Q8WTZ3 238 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 ST6GAL2Q96JF0 529 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 MAP6D1Q9H9H5 199 aa7.59□□□□□ -1.19
CCDC88C-206ENST00000553437 KIR2DL5BA0A0G2JN68 375 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 KIR2DL5BA0A0G2JPC4 375 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 CENPXA8MT69 81 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 MPTX1A8MV57 137 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 PRSS46E5RG02 174 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 SYNGR2O43760 224 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 MED6O75586 246 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 RD3LP0DJH9 198 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 PSG1P11464 419 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 P2RY1P47900 373 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 PAFAH1B2P68402 229 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 ID3Q02535 119 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 USF2Q15853 346 aaPredicted RBP7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 Q6ZWC4 215 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 LYG2Q86SG7 212 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 WFDC3Q8IUB2 231 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 KIR2DL5AQ8N109 375 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 KIR2DL5BQ8NHK3 375 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 MAGT1Q9H0U3 335 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 TMEM231Q9H6L2 316 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 CSMD3Q7Z407 3707 aa7.58□□□□□ -1.2
CCDC88C-206ENST00000553437 K7EQG2 157 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 DNASE2O00115 360 aaPredicted RBP7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 WRBO00258 174 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 UBE2CO00762 179 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 RGS13O14921 159 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 IL4P05112 153 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 RPL35AP18077 110 aaKnown RBP7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 APOC4P55056 127 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 RPL11P62913 178 aaKnown RBP7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 ZNF90Q03938 601 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 ZFAND6Q6FIF0 208 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 C16orf54Q6UWD8 224 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 TCTE3Q8IZS6 198 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 COQ8AQ8NI60 647 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 DCANP1Q8TF63 244 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 GLMPQ8WWB7 406 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 CIB3Q96Q77 187 aaPredicted RBP7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 MARVELD1Q9BSK0 173 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 TP53TG1Q9Y2A0 90 aa7.57□□□□□ -1.2
CCDC88C-206ENST00000553437 TENM2Q9NT68 2774 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 IGKV1OR2-108A0A075B7D4 117 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 BUB3O43684 328 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 DEFB131AP59861 70 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 POLR2GP62487 172 aaKnown RBP eCLIP7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 RAB11AP62491 216 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 C4orf46Q504U0 113 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 STPG3Q8N7X2 389 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 OR51G1Q8NGK1 321 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 OR4D5Q8NGN0 318 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 MITD1Q8WV92 249 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 RNF183Q96D59 192 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 NARS2Q96I59 477 aaKnown RBP7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 SLC35E1Q96K37 410 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 ALG5Q9Y673 324 aa7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 PLECQ15149 4684 aaKnown RBP7.56□□□□□ -1.2
CCDC88C-206ENST00000553437 ZFP92A6NM28 416 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 INMT-MINDY4F8WBC2 141 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 SPRY2O43597 315 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 IFNA21P01568 189 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 TCRBP04435 133 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 NKX2-1P43699 371 aaPredicted RBP7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 NKX2-5P52952 324 aaPredicted RBP7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 PAX9P55771 341 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 RRAS2P62070 204 aaPredicted RBP7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 RPP30P78346 268 aaKnown RBP7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 IFITM2Q01629 132 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 DEFB135Q30KP9 77 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 SPANXN5Q5MJ07 72 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 LEMD1Q68G75 181 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 THAP8Q8NA92 274 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 STXBP6Q8NFX7 210 aa7.55□□□□□ -1.2
CCDC88C-206ENST00000553437 RNF125Q96EQ8 232 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms