RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 POU6F1Q14863 301 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 PPP1R2P3Q6NXS1 205 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 TMED4Q7Z7H5 227 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 LINC00471Q8N535 108 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 LINC00311Q8N616 119 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 SH3BGRL3Q9H299 93 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 ECM29Q5VYK3 1845 aa1.3□□□□□ -2.2
PRKDC-205ENST00000535375 ARHGEF28Q8N1W1 1705 aaKnown RBP1.29□□□□□ -2.2
PRKDC-205ENST00000535375 LAMB2P55268 1798 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 ZNF462Q96JM2 2506 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 OR1I1O60431 355 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 LYZL6O75951 148 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 UBL3O95164 117 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 IFNA1P01562 189 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 EIF5AP63241 154 aaKnown RBP1.29□□□□□ -2.2
PRKDC-205ENST00000535375 BRMS1LQ5PSV4 323 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.29□□□□□ -2.2
PRKDC-205ENST00000535375 SERPINI1Q99574 410 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 RETNLBQ9BQ08 111 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 GINS3Q9BRX5 216 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 OR5AC2Q9NZP5 309 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 SLC35A3Q9Y2D2 325 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 UTP11Q9Y3A2 253 aaKnown RBP1.29□□□□□ -2.2
PRKDC-205ENST00000535375 FREM1Q5H8C1 2179 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 MAST4O15021 2626 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 RIMBP3CA6NJZ7 1639 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 RIMBP3BA6NNM3 1639 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 RIMBP3Q9UFD9 1639 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 SBF1O95248 1867 aa1.29□□□□□ -2.2
PRKDC-205ENST00000535375 TRAV14DV4A0A0A6YYC5 116 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 TRAV12-1A0A0B4J245 112 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 TAX1BP3O14907 124 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 SRP14P37108 136 aaKnown RBP1.28□□□□□ -2.2
PRKDC-205ENST00000535375 RHOBP62745 196 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 DYNLT1P63172 113 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 RHOGP84095 191 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 CDK5R1Q15078 307 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 ESRGQ1W209 222 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 C22orf39Q6P5X5 142 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 C12orf29Q8N999 325 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 PAIP2Q9BPZ3 127 aaKnown RBP1.28□□□□□ -2.2
PRKDC-205ENST00000535375 PRADC1Q9BSG0 188 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 REG4Q9BYZ8 158 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 BOLA2Q9H3K6 86 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 BCL2L10Q9HD36 194 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 MED29Q9NX70 200 aa1.28□□□□□ -2.2
PRKDC-205ENST00000535375 IGKV3D-7A0A0C4DH55 119 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 IGKV3OR2-268A0A0C4DH90 116 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 E5RI56 91 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 HCRTO43612 131 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 SULT1B1O43704 296 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 NDUFC2O95298 119 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 MGST1P10620 155 aaKnown RBP1.27□□□□□ -2.21
PRKDC-205ENST00000535375 GNG3P63215 75 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 GNG5P63218 68 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 RNASE10Q5GAN6 216 aaKnown RBP1.27□□□□□ -2.21
PRKDC-205ENST00000535375 Q8IYB0 196 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 OR2T10Q8NGZ9 312 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 CANT1Q8WVQ1 401 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 TEX37Q96LM6 180 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 YPEL2Q96QA6 119 aa1.27□□□□□ -2.21
PRKDC-205ENST00000535375 HOPXQ9BPY8 73 aaPredicted RBP1.27□□□□□ -2.21
PRKDC-205ENST00000535375 LYRM2Q9NU23 88 aaPredicted RBP1.27□□□□□ -2.21
PRKDC-205ENST00000535375 FLG2Q5D862 2391 aaPredicted RBP1.27□□□□□ -2.21
PRKDC-205ENST00000535375 TRGV10A0A0A0MS01 117 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 TRAV3A0A0B4J244 114 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 H7C1C5 153 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 AIPO00170 330 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 MFSD11O43934 449 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 PHBP35232 272 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 GNG10P50151 68 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 LCN6P62502 163 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 DEFB113Q30KQ7 82 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 AKR1C8PQ5T2L2 129 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 PDZD9Q8IXQ8 264 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 OR4C6Q8NH72 309 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 LYSMD1Q96S90 227 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 PBOV1Q9GZY1 135 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 TRABDQ9H4I3 376 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 MICAL3Q7RTP6 2002 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 BPTFQ12830 3046 aa1.26□□□□□ -2.21
PRKDC-205ENST00000535375 PCLOQ9Y6V0 5065 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 DENND4CQ5VZ89 1909 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 G3V2T6 193 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 BRS3P32247 399 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 SMIM20Q8N5G0 67 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 SLC30A7Q8NEW0 376 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 OR13C6PQ8NH95 151 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 ZNF418Q8TF45 676 aaPredicted RBP1.25□□□□□ -2.21
PRKDC-205ENST00000535375 SFT2D1Q8WV19 159 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 C14orf132Q9NPU4 83 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 ACER3Q9NUN7 267 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 SS18L2Q9UHA2 77 aa1.25□□□□□ -2.21
PRKDC-205ENST00000535375 RP1P56715 2156 aa1.24□□□□□ -2.21
PRKDC-205ENST00000535375 DUXBA0A1W2PPF3 345 aa1.24□□□□□ -2.21
PRKDC-205ENST00000535375 TMEM256-PLSCR3K7ERE1 68 aa1.24□□□□□ -2.21
PRKDC-205ENST00000535375 GGCTO75223 188 aaKnown RBP1.24□□□□□ -2.21
PRKDC-205ENST00000535375 PROSCO94903 275 aa1.24□□□□□ -2.21
PRKDC-205ENST00000535375 LYNX1P0DP58 116 aa1.24□□□□□ -2.21
PRKDC-205ENST00000535375 CRYBA4P53673 196 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms