RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 EIF3IQ13347 325 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 PMAIP1Q13794 54 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ATXN7L3Q14CW9 347 aaPredicted RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 IGFBP7Q16270 282 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CEACAM16Q2WEN9 425 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 FAM27D1Q5T7N8 215 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 HBMQ6B0K9 141 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 LCN12Q6JVE5 192 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 MRPL54Q6P161 138 aaKnown RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 PRSS41Q7RTY9 318 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 LHFPL1Q86WI0 220 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 PIANPQ8IYJ0 282 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 GAPTQ8N292 157 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 TEX29Q8N6K0 151 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 LINC01555Q8NAE3 123 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ZNF555Q8NEP9 628 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 OR5D14Q8NGL3 314 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 OR10G6Q8NH81 332 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 CNIH3Q8TBE1 160 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 TWIST2Q8WVJ9 160 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ARPC1AQ92747 370 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 PDCD1LG2Q9BQ51 273 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 C20orf78Q9BR46 151 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ZNF331Q9NQX6 463 aaPredicted RBP2.47□□□□□ -2.01
CD44-217ENST00000525348 PARP11Q9NR21 331 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 NDUFB11Q9NX14 153 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 ASF1AQ9Y294 204 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 PATJQ8NI35 1801 aa2.47□□□□□ -2.01
CD44-217ENST00000525348 DDX60Q8IY21 1712 aaKnown RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 FXYD6-FXYD2A0A087WZ82 144 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 A0A087X0T9 212 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 MUC21A0A140T8X8 626 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 FAM236AA0A1B0GUQ0 79 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 FAM236BA0A1B0GV22 79 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 KANTRA0A1W2PQU2 76 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 M0R1B8 84 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 OVOL1O14753 267 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 KLF7O75840 302 aaPredicted RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 TNFP01375 233 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 IGKV1D-16P01601 117 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 LINC00869P0C866 280 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 IFITM1P13164 125 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 SDC2P34741 201 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 OPRK1P41145 380 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 KIR2DS2P43631 304 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 POLR2JP52435 117 aaKnown RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 RND3P61587 244 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 UNC119Q13432 240 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 CLEC12BQ2HXU8 276 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 SP6Q3SY56 376 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 UBE2NLQ5JXB2 153 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 IBA57Q5T440 356 aaKnown RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 LEG1Q6P5S2 330 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 ZNF880Q6PDB4 577 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 LCN15Q6UWW0 184 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 SHISA6Q6ZSJ9 500 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 ZNF550Q7Z398 422 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 CMC1Q7Z7K0 106 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 ZNF695Q8IW36 515 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 SLC35F2Q8IXU6 374 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 C10orf111Q8N326 155 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 OR4K17Q8NGC6 315 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 OR8S1Q8NH09 359 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 ATP6V0E2Q8NHE4 81 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 PPTC7Q8NI37 304 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 VSTM2AQ8TAG5 236 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 RTN4IP1Q8WWV3 396 aaPredicted RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 POP5Q969H6 163 aaKnown RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 MAL2Q969L2 176 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 STARD4Q96DR4 205 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 PGLYRP3Q96LB9 341 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 SCGB3A2Q96PL1 93 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 CHST6Q9GZX3 395 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 FXYD6Q9H0Q3 95 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 PRO3102Q9H379 93 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 TCEAL2Q9H3H9 227 aaPredicted RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 GLIPR2Q9H4G4 154 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 ST20Q9HBF5 79 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 BCL2L10Q9HD36 194 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 CYTL1Q9NRR1 136 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 TMEM242Q9NWH2 141 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 C21orf62Q9NYP8 219 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 CCDC167Q9P0B6 97 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 TAAR3PQ9P1P4 343 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 WRAP73Q9P2S5 460 aaPredicted RBP2.46□□□□□ -2.02
CD44-217ENST00000525348 SCN8AQ9UQD0 1980 aa2.46□□□□□ -2.02
CD44-217ENST00000525348 MRC1P22897 1456 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 TMEM131Q92545 1883 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 UNC80Q8N2C7 3258 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 UMAD1C9J7I0 102 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 TMEM250H0YL14 139 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 K7EQS6 105 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 M0R1X1 148 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 SOCS1O15524 211 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 NUPR1O60356 82 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 NPIPB7O75200 414 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 SCRG1O75711 98 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 PROSCO94903 275 aa2.45□□□□□ -2.02
CD44-217ENST00000525348 NDUFB6O95139 128 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms