RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZNF257Q9Y2Q1 563 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 ZFHX3Q15911 3703 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 PMCHL1Q16048 86 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 TMEM155Q4W5P6 130 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 USP9XQ93008 2570 aaPredicted RBP10.74□□□□□ -0.69
VPS54-203ENST00000409558 PTPN13Q12923 2485 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 IGHV1-3A0A0C4DH29 117 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 TGOLN2O43493 480 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 G0S2P27469 103 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 RPL15P61313 204 aaKnown RBP10.74□□□□□ -0.69
VPS54-203ENST00000409558 JOSD1Q15040 202 aaPredicted RBP10.74□□□□□ -0.69
VPS54-203ENST00000409558 RCHY1Q96PM5 261 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 BPIFB3P59826 476 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 C17orf77Q96MU5 243 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 WNT10AQ9GZT5 417 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 ZNF331Q9NQX6 463 aaPredicted RBP10.73□□□□□ -0.69
VPS54-203ENST00000409558 V9GYV3 84 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 K7ENP7 123 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 IGLV2-23P01705 113 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 CSN3P07498 182 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 FBLN7Q53RD9 439 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 PRNTQ86SH4 94 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 PPP1R27Q86WC6 154 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 GBGT1Q8N5D6 347 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 CLEC7AQ9BXN2 247 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 GNB4Q9HAV0 340 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 GATCO43716 136 aaKnown RBP10.73□□□□□ -0.69
VPS54-203ENST00000409558 TCTAP57738 103 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 PKIAP61925 76 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 CTAG1AP78358 180 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 LCN2P80188 198 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 LDLRAD2Q5SZI1 272 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 BCL6BQ8N143 479 aaPredicted RBP10.73□□□□□ -0.69
VPS54-203ENST00000409558 SRSF12Q8WXF0 261 aaKnown RBP10.73□□□□□ -0.69
VPS54-203ENST00000409558 UTP20O75691 2785 aaKnown RBP10.73□□□□□ -0.69
VPS54-203ENST00000409558 LRRK2Q5S007 2527 aa10.73□□□□□ -0.69
VPS54-203ENST00000409558 IGHV3-49A0A0A0MS15 119 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 PRRX1P54821 245 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 TMEM177Q53S58 311 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 TMEM167AQ8TBQ9 72 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 IGHV3-66A0A0C4DH42 116 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 VPS13CQ709C8 3753 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 NBEAP1P0C6P0 100 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 PSG1P11464 419 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 PGLYRP4Q96LB8 373 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 MCRIP2Q9BUT9 160 aaKnown RBP10.72□□□□□ -0.69
VPS54-203ENST00000409558 UBTD1Q9HAC8 227 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 FLNCQ14315 2725 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 TCRBV4S1A1TA0A5B7 111 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 GOLT1AQ6ZVE7 132 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 C11orf42Q8N5U0 333 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 SIGLECL1Q8N7X8 197 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 OR5R1Q8NH85 324 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 FAM167A-AS1Q96KT0 104 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 SIGLEC9Q9Y336 463 aa10.72□□□□□ -0.69
VPS54-203ENST00000409558 B9A039 149 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 PEX7O00628 323 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 RPL19P84098 196 aaKnown RBP10.71□□□□□ -0.69
VPS54-203ENST00000409558 RNASEKQ6P5S7 137 aaKnown RBP10.71□□□□□ -0.69
VPS54-203ENST00000409558 SORL1Q92673 2214 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 IGKV1D-37A0A075B6S9 117 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 A6NNC1 897 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 FOXL1Q12952 345 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 AARDQ4LEZ3 155 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 CIARTQ8N365 385 aaPredicted RBP10.71□□□□□ -0.69
VPS54-203ENST00000409558 OR8B3Q8NGG8 313 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 OR8B2Q96RD0 313 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 LINC00527Q9UJ94 153 aa10.71□□□□□ -0.69
VPS54-203ENST00000409558 SONP18583 2426 aaKnown RBP10.71□□□□□ -0.7
VPS54-203ENST00000409558 IGLC7A0M8Q6 106 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 BUB1B-PAK6H3BSN5 160 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 HYPMO75409 117 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 NBL1P41271 181 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 COL25A1Q9BXS0 654 aaPredicted RBP10.71□□□□□ -0.7
VPS54-203ENST00000409558 NAGKQ9UJ70 344 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 RNF114Q9Y508 228 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 ABCA12Q86UK0 2595 aa10.71□□□□□ -0.7
VPS54-203ENST00000409558 CSMD2Q7Z408 3487 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 M0R3E3 92 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 FCGR2BP31994 310 aaPredicted RBP10.7□□□□□ -0.7
VPS54-203ENST00000409558 LCN12Q6JVE5 192 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 RASL11BQ9BPW5 248 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 POU2AF1Q16633 256 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 IGF2-ASQ6U949 168 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 Q6ZWC4 215 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 NUDT10Q8NFP7 164 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 NUDT11Q96G61 164 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 HIGD1CA8MV81 97 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 ST6GALNAC6Q969X2 333 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 DAZAP1Q96EP5 407 aaKnown RBP10.7□□□□□ -0.7
VPS54-203ENST00000409558 TP53TG3Q9ULZ0 132 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 CCDC168Q8NDH2 2452 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 ITGB1BP1O14713 200 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 MC5RP33032 325 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 ZNF138P52744 262 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 SLAQ13239 276 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 VKORC1Q9BQB6 163 aa10.7□□□□□ -0.7
VPS54-203ENST00000409558 EREGO14944 169 aa10.69□□□□□ -0.7
VPS54-203ENST00000409558 IL4P05112 153 aa10.69□□□□□ -0.7
VPS54-203ENST00000409558 OR1L4Q8NGR5 311 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms