RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 SGMS2Q8NHU3 365 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 PIFOQ8TCI5 191 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 HIGD1AQ9Y241 93 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 LY96Q9Y6Y9 160 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 IGHV4-38-2P0DP08 117 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 GP9P14770 177 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 LYZP61626 148 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 CLEC12BQ2HXU8 276 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 KLK9Q2XQG4 91 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 FAM210BQ96KR6 192 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 PYGO2Q9BRQ0 406 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 MEGF9Q9H1U4 602 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 MRPL27Q9P0M9 148 aaKnown RBP13.06□□□□□ -0.32
CCDC40-201ENST00000269318 KLK9Q9UKQ9 250 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 ABCA1O95477 2261 aa13.06□□□□□ -0.32
CCDC40-201ENST00000269318 KMT2BQ9UMN6 2715 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-201ENST00000269318 TOMM40O96008 361 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 FABP1P07148 127 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 SLC25A16P16260 332 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 MYCNOSP40205 109 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 GALR1P47211 349 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 C5orf56Q8N8D9 126 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 BIN3Q9NQY0 253 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 S4R3C0 116 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 CELSR2Q9HCU4 2923 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 A0A096LNT2 108 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 A0A0U1RQK1 487 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 HELTA6NFD8 242 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 B4DSR2 109 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 K7EN84 100 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 ATP6V0E1O15342 81 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 NDUFB8O95169 186 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 MFAP4P55083 255 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 ZNF329Q86UD4 541 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 NECAP1Q8NC96 275 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 FAM110DQ8TAY7 271 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-201ENST00000269318 SFRP2Q96HF1 295 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 C7orf69Q9H7B7 122 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 THYN1Q9P016 225 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 LRRK2Q5S007 2527 aa13.05□□□□□ -0.32
CCDC40-201ENST00000269318 TRAV30A0A087WSZ9 112 aa13.04□□□□□ -0.32
CCDC40-201ENST00000269318 YPEL3P61236 119 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-201ENST00000269318 ZNF491Q8N8L2 437 aa13.04□□□□□ -0.32
CCDC40-201ENST00000269318 OR5B12Q96R08 314 aa13.04□□□□□ -0.32
CCDC40-201ENST00000269318 SLC25A39Q9BZJ4 359 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-201ENST00000269318 SAV1Q9H4B6 383 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-201ENST00000269318 PPP1R2P9O14990 202 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 GNG7O60262 68 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 OR2J3O76001 311 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 SMUG1Q53HV7 270 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 CENPWQ5EE01 88 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 LEMD1Q68G75 181 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 TEX38Q6PEX7 206 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 HIF1ANQ9NWT6 349 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 C21orf62Q9NYP8 219 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 WI2-2373I1.2A0A1W2PRP0 233 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 HNF1AP20823 631 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 SRP14P37108 136 aaKnown RBP13.03□□□□□ -0.32
CCDC40-201ENST00000269318 TMEM14CQ9P0S9 112 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 FAM208BQ5VWN6 2430 aa13.03□□□□□ -0.32
CCDC40-201ENST00000269318 CSMD2Q7Z408 3487 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 MDFIC2A0A1B0GVS7 189 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 SH2D7A6NKC9 451 aaPredicted RBP13.02□□□□□ -0.32
CCDC40-201ENST00000269318 LINC01548A6NM66 108 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 AMY1AP04745 511 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 SNRPCP09234 159 aaKnown RBP13.02□□□□□ -0.32
CCDC40-201ENST00000269318 NBEAP1P0C6P0 100 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 S100PP25815 95 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 UNQ5815/PRO19632Q6UWF5 114 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 TMEM219Q86XT9 240 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 IGF2BP2-AS1Q96M15 143 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 TCEAL7Q9BRU2 100 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 TMUB1Q9BVT8 246 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 MOB4Q9Y3A3 225 aa13.02□□□□□ -0.32
CCDC40-201ENST00000269318 TRAV20A0A0B4J274 112 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 C5orf52A6NGY3 159 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 GGCTO75223 188 aaKnown RBP13.01□□□□□ -0.33
CCDC40-201ENST00000269318 AVPP01185 164 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 HIST1H1BP16401 226 aaKnown RBP13.01□□□□□ -0.33
CCDC40-201ENST00000269318 FCGR2BP31994 310 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-201ENST00000269318 GNG4P50150 75 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 ECSCRQ19T08 205 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 ZNF600Q6ZNG1 722 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 RNF125Q96EQ8 232 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 IMMP2LQ96T52 175 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 SHANK2-AS3Q9BTD1 123 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 FBXL7Q9UJT9 491 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 SOX21Q9Y651 276 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-201ENST00000269318 H3BRN7 92 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 IL4P05112 153 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 GATA3P23771 443 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 KRTAP10-9P60411 292 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 RANP62826 216 aaKnown RBP13.01□□□□□ -0.33
CCDC40-201ENST00000269318 Q56UQ5 140 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 BLNKQ8WV28 456 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 TMEM68Q96MH6 324 aa13.01□□□□□ -0.33
CCDC40-201ENST00000269318 PEX7O00628 323 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 PHOX2AO14813 284 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 TGOLN2O43493 480 aa13□□□□□ -0.33
CCDC40-201ENST00000269318 IGLV2-8P01709 118 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms