RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PEX7O00628 323 aa13.83□□□□□ -0.19
VPS53-215ENST00000573028 SLC25A17O43808 307 aa13.83□□□□□ -0.19
VPS53-215ENST00000573028 H0YJW9 148 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 CD24P25063 80 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 TNXAQ16473 311 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 Q56UQ5 140 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 IGFL2Q6UWQ7 119 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 PATE2Q6UY27 113 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 FAM169BQ8N8A8 192 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 NUP35Q8NFH5 326 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 OR2D3Q8NGH3 330 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 OR1B1Q8NGR6 318 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 C18orf32Q8TCD1 76 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 C19orf24Q9BVV8 132 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 NKX6-3A6NJ46 265 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 SLC25A5P05141 298 aaKnown RBP13.83□□□□□ -0.2
VPS53-215ENST00000573028 CD40P25942 277 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 GATA4P43694 442 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 HNRNPA3P51991 378 aaKnown RBP13.83□□□□□ -0.2
VPS53-215ENST00000573028 UBE2G1P62253 170 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 LINC00305Q7Z4B0 112 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 OSR1Q8TAX0 266 aaPredicted RBP13.83□□□□□ -0.2
VPS53-215ENST00000573028 ASCL3Q9NQ33 180 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 TPSG1Q9NRR2 321 aa13.83□□□□□ -0.2
VPS53-215ENST00000573028 TOX4O94842 621 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 GDF5OSQ5U4N7 250 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 MRPL32Q9BYC8 188 aaKnown RBP13.82□□□□□ -0.2
VPS53-215ENST00000573028 GAL3ST2Q9H3Q3 398 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 HIGD1CA8MV81 97 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 ZGRF1Q86YA3 2104 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 SPACA3Q8IXA5 215 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 ZNF714Q96N38 554 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 ZNF430Q9H8G1 570 aaPredicted RBP13.82□□□□□ -0.2
VPS53-215ENST00000573028 SSUH2Q9Y2M2 353 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 LINC00312Q9Y6C7 94 aa13.82□□□□□ -0.2
VPS53-215ENST00000573028 M0R2Z0 102 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 DLX1P56177 255 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 TBR1Q16650 682 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 LEMD1Q68G75 181 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 ZNF329Q86UD4 541 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 CLEC7AQ9BXN2 247 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 TM4SF5O14894 197 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 PRRX1P54821 245 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 COX19Q49B96 90 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 TCF24Q7RTU0 167 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 C11orf42Q8N5U0 333 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 CACNG8Q8WXS5 425 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 PGPA6NDG6 321 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 HYPMO75409 117 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 FOXA3P55318 350 aaPredicted RBP13.81□□□□□ -0.2
VPS53-215ENST00000573028 BPIFB3P59826 476 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 COL5A1-AS1Q5SY13 56 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 DMRTA1Q5VZB9 504 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 TMEM200BQ69YZ2 307 aa13.81□□□□□ -0.2
VPS53-215ENST00000573028 M0QZ24 198 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 PMCHL1Q16048 86 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 RUSC1-AS1Q66K80 236 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 ZNF833PQ6ZTB9 187 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 NCOR1P1Q9H4R4 102 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 UQCR10Q9UDW1 63 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 KALRNO60229 2985 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 PSMB11A5LHX3 300 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 PDPNQ86YL7 162 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 OR1L4Q8NGR5 311 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 RITA1Q96K30 269 aa13.8□□□□□ -0.2
VPS53-215ENST00000573028 TIMM8BQ9Y5J9 83 aaPredicted RBP13.8□□□□□ -0.2
VPS53-215ENST00000573028 IGLC2P0DOY2 106 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 IGLC3P0DOY3 106 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 HINT1P49773 126 aaPredicted RBP13.79□□□□□ -0.2
VPS53-215ENST00000573028 C1orf185Q5T7R7 199 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 Q6ZVH6 145 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 STPG4Q8N801 248 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 OR4C13Q8NGP0 309 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 SH2D7A6NKC9 451 aaPredicted RBP13.79□□□□□ -0.2
VPS53-215ENST00000573028 LYPD2Q6UXB3 125 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 GSX1Q9H4S2 264 aaPredicted RBP13.79□□□□□ -0.2
VPS53-215ENST00000573028 TCRBV4S1A1TA0A5B7 111 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 CTRLP40313 264 aa13.79□□□□□ -0.2
VPS53-215ENST00000573028 CGB1A6NKQ9 187 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 K7EM74 188 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 ZNF137PP52743 207 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 SUB1P53999 127 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS53-215ENST00000573028 PNKDQ8N490 385 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 FXYD5Q96DB9 178 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 TNFRSF19Q9NS68 423 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 CLEC5AQ9NY25 188 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 TACC2O95359 2948 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 SIAH2O43255 324 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 TNFRSF1AP19438 455 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 ZNF841Q6ZN19 808 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 OR5AN1Q8NGI8 311 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 GRAMD2BQ96HH9 432 aa13.78□□□□□ -0.2
VPS53-215ENST00000573028 IGKV1D-37A0A075B6S9 117 aa13.77□□□□□ -0.2
VPS53-215ENST00000573028 TCF21O43680 179 aa13.77□□□□□ -0.2
VPS53-215ENST00000573028 A0A1W2PPI3 338 aa13.77□□□□□ -0.21
VPS53-215ENST00000573028 FCN3O75636 299 aa13.77□□□□□ -0.21
VPS53-215ENST00000573028 ATP5IP56385 69 aaPredicted RBP13.77□□□□□ -0.21
VPS53-215ENST00000573028 ZNF835Q9Y2P0 537 aa13.77□□□□□ -0.21
VPS53-215ENST00000573028 LAMTOR2Q9Y2Q5 125 aa13.77□□□□□ -0.21
VPS53-215ENST00000573028 ANKRD11Q6UB99 2663 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 184.4 ms