RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 RNF2Q99496 336 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 SPATA25Q9BR10 227 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 RHPN1-AS1Q9BWJ2 59 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 HIPK2Q9H2X6 1198 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 ZFAND3Q9H8U3 227 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 EDA2RQ9HAV5 297 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 HEYLQ9NQ87 328 aaPredicted RBP7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 HSPB7Q9UBY9 170 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 IGHV3-49A0A0A0MS15 119 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 TRAV14DV4A0A0A6YYC5 116 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 PITX3O75364 302 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 IGKV1-17P01599 117 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 OPRK1P41145 380 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 SMCO1Q147U7 214 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 TRIQKQ629K1 86 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 MZT2BQ6NZ67 158 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 PRSS54Q6PEW0 395 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 LILRB2Q8N423 598 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 LRTM2Q8N967 370 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 SLC24A4Q8NFF2 622 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 RNASEH2CQ8TDP1 164 aaKnown RBP7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 VSIRQ9H7M9 311 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 RETNQ9HD89 108 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 CACFD1Q9UGQ2 172 aa7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 PUS1Q9Y606 427 aaKnown RBP eCLIP7.65□□□□□ -1.18
CCDC88C-206ENST00000553437 IGHV3OR16-13A0A075B7E8 117 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 IGHV3-74A0A0B4J1X5 117 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 DUXBA0A1W2PPF3 345 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 C3orf84H3BNL1 204 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 SFT2D2O95562 160 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 APOHP02749 345 aaPredicted RBP7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 CD300CQ08708 224 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 PPP1R1AQ13522 171 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 ODF3L2Q3SX64 289 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 NRARPQ7Z6K4 114 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 MUC7Q8TAX7 377 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 ENKURQ8TC29 256 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 ST8SIA2Q92186 375 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 RBKSQ9H477 322 aa7.64□□□□□ -1.19
CCDC88C-206ENST00000553437 RPS10-NUDT3A0A1W2PQS6 291 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 NAP1L6A6NFF2 107 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 ATP6V1G1O75348 118 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 CCNKO75909 580 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 NDUFB6O95139 128 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 IGLC1P0CG04 106 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 SLC25A4P12235 298 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 SLC25A6P12236 298 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 VAMP1P23763 118 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 NPY1RP25929 384 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 BTCP35070 178 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 RBMS2Q15434 407 aaKnown RBP7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 TIGITQ495A1 244 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 DTD1Q8TEA8 209 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 FAM110AQ9BQ89 295 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 GINS3Q9BRX5 216 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 GGTLC1Q9BX51 225 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 UBQLN2Q9UHD9 624 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 FLVCR2Q9UPI3 526 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 U3KQ87 197 aa7.63□□□□□ -1.19
CCDC88C-206ENST00000553437 TRAV30A0A087WSZ9 112 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 LOC102724200A0A096LPH7 203 aaPredicted RBP7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 PIGBOS1A0A0B4J2F0 54 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 IGHV3-66A0A0C4DH42 116 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 OR4C46A6NHA9 309 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 IFNA10P01566 189 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 INPP1P49441 399 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 RND2P52198 227 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 YPEL3P61236 119 aaPredicted RBP7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 TCF24Q7RTU0 167 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 NOXA1Q86UR1 476 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 OR1S2Q8NGQ3 325 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 OR1S1Q8NH92 325 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 LYSTQ99698 3801 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 TMED3Q9Y3Q3 217 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 DNAH1Q9P2D7 4330 aa7.62□□□□□ -1.19
CCDC88C-206ENST00000553437 STARD9Q9P2P6 4700 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 LINC00854A0A1B0GVQ3 168 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 C9orf170A2RU37 121 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 PLA2G10O15496 165 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 DFFBO76075 338 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 NPPCP23582 126 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 CRYBB3P26998 211 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 OR10J1P30954 320 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 ATP5IP56385 69 aaPredicted RBP7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 UBE2MP61081 183 aaKnown RBP7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 CASC10Q5T4H9 136 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 GGNBP1Q5YKI7 109 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 ETFRF1Q6IPR1 90 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 NPIPB3Q92617 1050 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 U3KQE9 123 aa7.61□□□□□ -1.19
CCDC88C-206ENST00000553437 IGKV3-7A0A075B6H7 116 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 FAM90A26D6RGX4 464 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 LYRM1O43325 122 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 SCGB2A1O75556 95 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 CD5P06127 495 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 HOXB5P09067 269 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 LYL1P12980 280 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 BMI1P35226 326 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 TFPI2P48307 235 aa7.6□□□□□ -1.19
CCDC88C-206ENST00000553437 APRG1Q8IVJ8 170 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms