RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.84□□□□□ -0.99
CUX1-212ENST00000547394 LY6G5BQ8NDX9 201 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 BEND2Q8NDZ0 799 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 BLNKQ8WV28 456 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 HIST1H2BHQ93079 126 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 HIST1H2BNQ99877 126 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 HIST1H2BMQ99879 126 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 KCNIP2Q9NS61 270 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 RPH3ALQ9UNE2 315 aa8.84□□□□□ -0.99
CUX1-212ENST00000547394 K7EN84 100 aa8.83□□□□□ -1
CUX1-212ENST00000547394 CRYGBP07316 175 aa8.83□□□□□ -1
CUX1-212ENST00000547394 UBE2L3P68036 154 aaKnown RBP8.83□□□□□ -1
CUX1-212ENST00000547394 FAM71F2Q6NXP2 309 aa8.83□□□□□ -1
CUX1-212ENST00000547394 MMD2Q8IY49 270 aa8.83□□□□□ -1
CUX1-212ENST00000547394 SLC25A2Q9BXI2 301 aa8.83□□□□□ -1
CUX1-212ENST00000547394 TNFRSF19Q9NS68 423 aa8.83□□□□□ -1
CUX1-212ENST00000547394 DPM3Q9P2X0 92 aa8.83□□□□□ -1
CUX1-212ENST00000547394 TRAV34A0A0B4J273 112 aa8.83□□□□□ -1
CUX1-212ENST00000547394 B4DEV8 164 aa8.83□□□□□ -1
CUX1-212ENST00000547394 PDE6DO43924 150 aa8.83□□□□□ -1
CUX1-212ENST00000547394 SPINK4O60575 86 aa8.83□□□□□ -1
CUX1-212ENST00000547394 TRGC1P0CF51 173 aa8.83□□□□□ -1
CUX1-212ENST00000547394 PMS2P11Q13670 270 aa8.83□□□□□ -1
CUX1-212ENST00000547394 C9orf152Q5JTZ5 239 aa8.83□□□□□ -1
CUX1-212ENST00000547394 PRR31Q5SQ13 230 aa8.83□□□□□ -1
CUX1-212ENST00000547394 DTX2Q86UW9 622 aa8.83□□□□□ -1
CUX1-212ENST00000547394 MALSU1Q96EH3 234 aa8.83□□□□□ -1
CUX1-212ENST00000547394 FRMD6-AS1P0C7T7 363 aa8.83□□□□□ -1
CUX1-212ENST00000547394 CDPF1Q6NVV7 123 aa8.83□□□□□ -1
CUX1-212ENST00000547394 TEX45Q8NA69 505 aa8.83□□□□□ -1
CUX1-212ENST00000547394 NEU4Q8WWR8 484 aaPredicted RBP8.83□□□□□ -1
CUX1-212ENST00000547394 TNFRSF14Q92956 283 aa8.83□□□□□ -1
CUX1-212ENST00000547394 DNAJC4Q9NNZ3 241 aa8.83□□□□□ -1
CUX1-212ENST00000547394 IGHV3OR16-8A0A075B7F1 116 aa8.82□□□□□ -1
CUX1-212ENST00000547394 F6UZH7 168 aa8.82□□□□□ -1
CUX1-212ENST00000547394 ANKRD17O75179 2603 aaKnown RBP8.82□□□□□ -1
CUX1-212ENST00000547394 PFN1P07737 140 aaKnown RBP8.82□□□□□ -1
CUX1-212ENST00000547394 SUB1P53999 127 aaKnown RBP eCLIP8.82□□□□□ -1
CUX1-212ENST00000547394 GNG5P63218 68 aa8.82□□□□□ -1
CUX1-212ENST00000547394 SLC35B1P78383 322 aa8.82□□□□□ -1
CUX1-212ENST00000547394 FAM120AOSQ5T036 256 aa8.82□□□□□ -1
CUX1-212ENST00000547394 C10orf113Q5VZT2 155 aa8.82□□□□□ -1
CUX1-212ENST00000547394 LINC00305Q7Z4B0 112 aa8.82□□□□□ -1
CUX1-212ENST00000547394 OR4A5Q8NH83 315 aa8.82□□□□□ -1
CUX1-212ENST00000547394 C8orf46Q8TAG6 207 aa8.82□□□□□ -1
CUX1-212ENST00000547394 EAF1Q96JC9 268 aaPredicted RBP8.82□□□□□ -1
CUX1-212ENST00000547394 FAM167A-AS1Q96KT0 104 aa8.82□□□□□ -1
CUX1-212ENST00000547394 WNT10AQ9GZT5 417 aa8.82□□□□□ -1
CUX1-212ENST00000547394 TECRQ9NZ01 308 aaKnown RBP8.82□□□□□ -1
CUX1-212ENST00000547394 NBPF19A0A087WUL8 3843 aa8.82□□□□□ -1
CUX1-212ENST00000547394 PSMB11A5LHX3 300 aa8.82□□□□□ -1
CUX1-212ENST00000547394 IFITM10A6NMD0 228 aa8.82□□□□□ -1
CUX1-212ENST00000547394 RBP4P02753 201 aa8.82□□□□□ -1
CUX1-212ENST00000547394 NDPQ00604 133 aa8.82□□□□□ -1
CUX1-212ENST00000547394 FXYD3Q14802 87 aa8.82□□□□□ -1
CUX1-212ENST00000547394 OR5B12Q96R08 314 aa8.82□□□□□ -1
CUX1-212ENST00000547394 CUBNO60494 3623 aa8.82□□□□□ -1
CUX1-212ENST00000547394 IGHV3-35A0A0C4DH35 117 aa8.81□□□□□ -1
CUX1-212ENST00000547394 TCRBV4S1A1TA0A5B7 111 aa8.81□□□□□ -1
CUX1-212ENST00000547394 CXorf65A6NEN9 183 aa8.81□□□□□ -1
CUX1-212ENST00000547394 NDUFS6O75380 124 aaKnown RBP8.81□□□□□ -1
CUX1-212ENST00000547394 C8orf88P0DMB2 117 aa8.81□□□□□ -1
CUX1-212ENST00000547394 RANP62826 216 aaKnown RBP8.81□□□□□ -1
CUX1-212ENST00000547394 PYY3Q5JQD4 70 aa8.81□□□□□ -1
CUX1-212ENST00000547394 PQLC2Q6ZP29 291 aa8.81□□□□□ -1
CUX1-212ENST00000547394 BCL6BQ8N143 479 aaPredicted RBP8.81□□□□□ -1
CUX1-212ENST00000547394 CACNG8Q8WXS5 425 aa8.81□□□□□ -1
CUX1-212ENST00000547394 CFHR4Q92496 578 aa8.81□□□□□ -1
CUX1-212ENST00000547394 ASCL2Q99929 193 aa8.81□□□□□ -1
CUX1-212ENST00000547394 HOXB4P17483 251 aaPredicted RBP8.81□□□□□ -1
CUX1-212ENST00000547394 HOXA5P20719 270 aa8.81□□□□□ -1
CUX1-212ENST00000547394 MAS1LP35410 378 aa8.81□□□□□ -1
CUX1-212ENST00000547394 GPX4P36969 197 aaPredicted RBP8.81□□□□□ -1
CUX1-212ENST00000547394 RNASEH2CQ8TDP1 164 aaKnown RBP8.81□□□□□ -1
CUX1-212ENST00000547394 RNASE7Q9H1E1 156 aaKnown RBP8.81□□□□□ -1
CUX1-212ENST00000547394 AMMECR1Q9Y4X0 333 aaPredicted RBP8.81□□□□□ -1
CUX1-212ENST00000547394 SOX21Q9Y651 276 aaPredicted RBP8.81□□□□□ -1
CUX1-212ENST00000547394 NAV2Q8IVL1 2488 aa8.81□□□□□ -1
CUX1-212ENST00000547394 A0A1B0GUS0 222 aa8.8□□□□□ -1
CUX1-212ENST00000547394 PRTN3P24158 256 aa8.8□□□□□ -1
CUX1-212ENST00000547394 LYZP61626 148 aa8.8□□□□□ -1
CUX1-212ENST00000547394 TIGITQ495A1 244 aa8.8□□□□□ -1
CUX1-212ENST00000547394 CENPWQ5EE01 88 aa8.8□□□□□ -1
CUX1-212ENST00000547394 SGMS2Q8NHU3 365 aa8.8□□□□□ -1
CUX1-212ENST00000547394 SFRP2Q96HF1 295 aa8.8□□□□□ -1
CUX1-212ENST00000547394 GPR61Q9BZJ8 451 aa8.8□□□□□ -1
CUX1-212ENST00000547394 A6NNC1 897 aa8.8□□□□□ -1
CUX1-212ENST00000547394 NBR2O15453 112 aa8.8□□□□□ -1
CUX1-212ENST00000547394 CA1P00915 261 aaPredicted RBP8.8□□□□□ -1
CUX1-212ENST00000547394 MGST1P10620 155 aaKnown RBP8.8□□□□□ -1
CUX1-212ENST00000547394 TCL1AP56279 114 aa8.8□□□□□ -1
CUX1-212ENST00000547394 Q71RC1 249 aaPredicted RBP8.8□□□□□ -1
CUX1-212ENST00000547394 OR11H6Q8NGC7 330 aa8.8□□□□□ -1
CUX1-212ENST00000547394 PFDN5Q99471 154 aa8.8□□□□□ -1
CUX1-212ENST00000547394 CCDC168Q8NDH2 2452 aa8.8□□□□□ -1
CUX1-212ENST00000547394 CHD6Q8TD26 2715 aa8.8□□□□□ -1
CUX1-212ENST00000547394 IGHV4-39P01824 125 aa8.79□□□□□ -1
CUX1-212ENST00000547394 SFTPCP11686 197 aa8.79□□□□□ -1
CUX1-212ENST00000547394 S100A2P29034 98 aa8.79□□□□□ -1
CUX1-212ENST00000547394 PAXXQ9BUH6 204 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms