RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 IGHV3-53P01767 116 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 C9orf139Q6ZV77 190 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 NIT1Q86X76 327 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 LYZL4Q96KX0 146 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 IGKV1D-13A0A0B4J2D9 117 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 TMEM238C9JI98 176 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 IGKV1-13P0DP09 117 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 TMEM200BQ69YZ2 307 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 NHP2Q9NX24 153 aaKnown RBP12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 BRD3OSQ6XYD6 125 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 HAPLN4Q86UW8 402 aa12.98□□□□□ -0.33
NUCKS1-201ENST00000367142 RPL23P62829 140 aaKnown RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 TMEM178BH3BS89 294 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 CCL1P22362 96 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 ZNF876PQ49A33 203 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 LAMTOR3Q9UHA4 124 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 MIA3Q5JRA6 1907 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 SEC11AP67812 179 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 ERCC8Q13216 396 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 Q5BKY6 102 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 TEX43Q6ZNM6 134 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 IGKV2-40A0A087WW87 121 aaPredicted RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 IGKV2D-40P01614 121 aaPredicted RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 RIPPLY3P57055 190 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 ATP5L2Q7Z4Y8 100 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 TDRD15B5MCY1 1934 aaKnown RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 RPL15P61313 204 aaKnown RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 RPUSD1Q9UJJ7 312 aaKnown RBP12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 SELENOKQ9Y6D0 94 aa12.97□□□□□ -0.33
NUCKS1-201ENST00000367142 CARHSP1Q9Y2V2 147 aaKnown RBP12.96□□□□□ -0.33
NUCKS1-201ENST00000367142 NRN1Q9NPD7 142 aa12.96□□□□□ -0.33
NUCKS1-201ENST00000367142 H3BUT2 72 aa12.96□□□□□ -0.33
NUCKS1-201ENST00000367142 EREGO14944 169 aa12.96□□□□□ -0.33
NUCKS1-201ENST00000367142 CHCHD1Q96BP2 118 aaKnown RBP12.96□□□□□ -0.33
NUCKS1-201ENST00000367142 FXYD7P58549 80 aa12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 SS18Q15532 418 aa12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 LINC01559Q495D7 138 aa12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 CD300EQ496F6 205 aaPredicted RBP12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 PLEKHB2Q96CS7 222 aa12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 SMPXQ9UHP9 88 aa12.96□□□□□ -0.34
NUCKS1-201ENST00000367142 ADMP35318 185 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 COL24A1Q17RW2 1714 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 EFNB3Q15768 340 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 MCM3APO60318 1980 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 INS-IGF2F8WCM5 200 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 TSKUQ8WUA8 353 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 NPIPB5A8MRT5 1133 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 HEPN1Q6WQI6 88 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 RPL32P62910 135 aaKnown RBP12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 OR10W1Q8NGF6 305 aa12.95□□□□□ -0.34
NUCKS1-201ENST00000367142 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 A0A1B0GWJ7 208 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 C6orf226Q5I0X4 101 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 LINC00477Q96M19 166 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 SRRM5B3KS81 715 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 SERF1AO75920 110 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 ERG28Q9UKR5 140 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 ASCC3Q8N3C0 2202 aaKnown RBP12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 SRRM4A7MD48 611 aaKnown RBP12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 SFTA2Q6UW10 78 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 UBR3Q6ZT12 1888 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 E9PQ18 207 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 LGALS1P09382 135 aaKnown RBP12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 SP5Q6BEB4 398 aaPredicted RBP12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 A0A0G2JNJ9 132 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 NDUFS8O00217 210 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 ZNF138P52744 262 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 Q9UFV3 132 aa12.94□□□□□ -0.34
NUCKS1-201ENST00000367142 C1QTNF9P0C862 333 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 UBE2E2Q96LR5 201 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 DERL1Q9BUN8 251 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 FCN3O75636 299 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 OVOL2Q9BRP0 275 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 SLC25A39Q9BZJ4 359 aaPredicted RBP12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 CLDN16Q9Y5I7 305 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 STRCP1A6NGW2 1772 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 BMPERQ8N8U9 685 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 BRWD1Q9NSI6 2320 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 ATG2BQ96BY7 2078 aa12.93□□□□□ -0.34
NUCKS1-201ENST00000367142 CD55P08174 381 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 NPC2P61916 151 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 PCM1Q15154 2024 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 ERVH48-1M5A8F1 160 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 TMEM170AQ8WVE7 144 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 KIAA1217Q5T5P2 1943 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 PMS2P5A8MQ11 134 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 C5orf64Q2M2E5 130 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 IFI27L1Q96BM0 104 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 FBLN5Q9UBX5 448 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 TRAV5A0A0B4J249 113 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 PSG1P11464 419 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 GNB1LQ9BYB4 327 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 COL4A5P29400 1685 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 NDPQ00604 133 aa12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 SLC25A48Q6ZT89 311 aaKnown RBP12.92□□□□□ -0.34
NUCKS1-201ENST00000367142 A8MWV9 139 aa12.91□□□□□ -0.34
NUCKS1-201ENST00000367142 TNFSF13O75888 250 aa12.91□□□□□ -0.34
NUCKS1-201ENST00000367142 TRGV9Q99603 122 aa12.91□□□□□ -0.34
NUCKS1-201ENST00000367142 VWC2LB2RUY7 222 aa12.91□□□□□ -0.34
NUCKS1-201ENST00000367142 ANAPC10Q9UM13 185 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms