RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CACNG5Q9UF02 275 aa8.44□□□□□ -1.06
VPS39-214ENST00000614932 IGLV3-32A0A0A0MS00 114 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 TRGV10A0A0A0MS01 117 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 TRAV25A0A0B4J276 109 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 SMIM27A0A1W2PRY6 76 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 NPIPB5A8MRT5 1133 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 FABP5P3A8MUU1 101 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 CXCL13O43927 109 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 XGP55808 180 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 IZUMO4Q1ZYL8 232 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 ALKBH6Q3KRA9 238 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 ZFAND6Q6FIF0 208 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 OR9G4Q8NGQ1 327 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 ZNF502Q8TBZ5 544 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 WIPF2Q8TF74 440 aaPredicted RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 GTSF1Q8WW33 167 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 URB1-AS1Q96HZ7 61 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 NPCDR1Q9BY65 106 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 DEPPQ9NTK1 212 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 TNRC6BQ9UPQ9 1833 aaKnown RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 P04436 131 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 NHLRC4P0CG21 123 aaPredicted RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 DSCR4P56555 118 aaPredicted RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 CR1LQ2VPA4 569 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 TEPPQ6URK8 271 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 OSR1Q8TAX0 266 aaPredicted RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 NANOS1Q8WY41 292 aaKnown RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 CITED2Q99967 270 aaPredicted RBP8.43□□□□□ -1.06
VPS39-214ENST00000614932 PPDPFQ9H3Y8 114 aa8.43□□□□□ -1.06
VPS39-214ENST00000614932 MYO7BQ6PIF6 2116 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 A0A1W2PNU3 283 aaPredicted RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 OR5AL1P0C617 328 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 SPINK2P20155 84 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 PLP2Q04941 152 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 FXYD3Q14802 87 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 ZNF146Q15072 292 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 TMEM14EPQ6UXP3 125 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 LINC00696Q6ZRV3 163 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 Q6ZS49 121 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 ZNF645Q8N7E2 425 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 TEX45Q8NA69 505 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 OR1L1Q8NH94 360 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 PTH2Q96A98 100 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 COL25A1Q9BXS0 654 aaPredicted RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 NCKAP5O14513 1909 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 TFF3Q07654 80 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 VWC2Q2TAL6 325 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 TIGITQ495A1 244 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 LINC01545Q5VT33 79 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 C6orf15Q6UXA7 325 aaPredicted RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 TEX29Q8N6K0 151 aa8.42□□□□□ -1.06
VPS39-214ENST00000614932 CHCHD1Q96BP2 118 aaKnown RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 RNASE7Q9H1E1 156 aaKnown RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.42□□□□□ -1.06
VPS39-214ENST00000614932 FAM90A27PA6NNH2 459 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 OR2J3O76001 311 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 B4GALT1P15291 398 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 PRTN3P24158 256 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 GUSBP1Q15486 140 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.41□□□□□ -1.06
VPS39-214ENST00000614932 C11orf52Q96A22 123 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 LYZL4Q96KX0 146 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 MCRIP2Q9BUT9 160 aaKnown RBP8.41□□□□□ -1.06
VPS39-214ENST00000614932 WIPF1O43516 503 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 CLDN14O95500 239 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 KIR2DS4P43632 304 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 GAGE13Q4V321 117 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 ATP1A1-AS1Q5TC04 95 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 PEAR1Q5VY43 1037 aaPredicted RBP8.41□□□□□ -1.06
VPS39-214ENST00000614932 Q6AWC8 147 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 CCL28Q9NRJ3 127 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 MPC1Q9Y5U8 109 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 DOCK10Q96BY6 2186 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 ZNF407Q9C0G0 2248 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 DOCK7Q96N67 2140 aa8.41□□□□□ -1.06
VPS39-214ENST00000614932 A0A1W2PRE2 83 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 NPIPB13A6NJU9 1138 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 NPIPB4C9JG80 1138 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 C3orf80F5H4A9 247 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 SCGB2A1O75556 95 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 PGLYRP1O75594 196 aaPredicted RBP8.4□□□□□ -1.06
VPS39-214ENST00000614932 APOMO95445 188 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A10P0DMU9 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 FOXI1Q12951 378 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 C3AR1Q16581 482 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 TMEM211Q6ICI0 200 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 ADTRPQ96IZ2 230 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 C1QTNF5Q9BXJ0 243 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 SPANXA1Q9NS26 97 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 PCSK5Q92824 1860 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 MED13Q9UHV7 2174 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 DNAJC13O75165 2243 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CACNA1HO95180 2353 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CCDC179H3BU77 68 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 SMAD7O15105 426 aaKnown RBP8.4□□□□□ -1.06
VPS39-214ENST00000614932 THBDP07204 575 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A6P0DMU7 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A5P0DMU8 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A7P0DMV0 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 TAS2R45P59539 299 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms