RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 SLC16A13Q7RTY0 426 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 LILRB2Q8N423 598 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 SPAG8Q99932 426 aaPredicted RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 MCUBQ9NWR8 336 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 GAR1Q9NY12 217 aaKnown RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 PLECQ15149 4684 aaKnown RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 IGHV3OR16-13A0A075B7E8 117 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 IGHV3-74A0A0B4J1X5 117 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 ZNF701M0R085 212 aaPredicted RBP9.02□□□□□ -0.97
LIG1-217ENST00000599165 GNG7O60262 68 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 SNCAP37840 140 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 RELQ04864 619 aaPredicted RBP9.02□□□□□ -0.97
LIG1-217ENST00000599165 RBPMS2Q6ZRY4 209 aaKnown RBP9.02□□□□□ -0.97
LIG1-217ENST00000599165 LYZL2Q7Z4W2 148 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 IL22RA2Q969J5 263 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 RHPN1-AS1Q9BWJ2 59 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 SRRQ9GZT4 340 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 UBQLN2Q9UHD9 624 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 SCP2D1Q9UJQ7 156 aa9.02□□□□□ -0.97
LIG1-217ENST00000599165 CCDC160A6NGH7 325 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 NXPH3O95157 252 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 IGKV1-17P01599 117 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 AKR1C4P17516 323 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 PYDC2Q56P42 97 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 TMEM116Q8NCL8 245 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 DUSP18Q8NEJ0 188 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 OR4X1Q8NH49 305 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 RNASE11Q8TAA1 199 aaKnown RBP9.01□□□□□ -0.97
LIG1-217ENST00000599165 SDHCQ99643 169 aaPredicted RBP9.01□□□□□ -0.97
LIG1-217ENST00000599165 PDCD10Q9BUL8 212 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 VSIRQ9H7M9 311 aa9.01□□□□□ -0.97
LIG1-217ENST00000599165 PUS1Q9Y606 427 aaKnown RBP eCLIP9.01□□□□□ -0.97
LIG1-217ENST00000599165 HYDINQ4G0P3 5121 aa9□□□□□ -0.97
LIG1-217ENST00000599165 AGRNO00468 2067 aa9□□□□□ -0.97
LIG1-217ENST00000599165 A0A0B4J2A0 478 aa9□□□□□ -0.97
LIG1-217ENST00000599165 CORTO00230 105 aa9□□□□□ -0.97
LIG1-217ENST00000599165 CLN5O75503 358 aa9□□□□□ -0.97
LIG1-217ENST00000599165 YIF1AO95070 293 aa9□□□□□ -0.97
LIG1-217ENST00000599165 NPBWR1P48145 328 aa9□□□□□ -0.97
LIG1-217ENST00000599165 ZNF124Q15973 351 aa9□□□□□ -0.97
LIG1-217ENST00000599165 ANKRD55Q3KP44 614 aa9□□□□□ -0.97
LIG1-217ENST00000599165 C2orf83Q53S99 150 aa9□□□□□ -0.97
LIG1-217ENST00000599165 ZNF600Q6ZNG1 722 aa9□□□□□ -0.97
LIG1-217ENST00000599165 ST8SIA2Q92186 375 aa9□□□□□ -0.97
LIG1-217ENST00000599165 OVOL2Q9BRP0 275 aa9□□□□□ -0.97
LIG1-217ENST00000599165 GGTLC1Q9BX51 225 aa9□□□□□ -0.97
LIG1-217ENST00000599165 SHPKQ9UHJ6 478 aa9□□□□□ -0.97
LIG1-217ENST00000599165 LYSTQ99698 3801 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 TRAV14DV4A0A0A6YYC5 116 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 PITX3O75364 302 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 IGLC1P0CG04 106 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 SULT1A3P0DMM9 295 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 SULT1A4P0DMN0 295 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 OPRK1P41145 380 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 HTR2BP41595 481 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 TNFRSF9Q07011 255 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 BAK1Q16611 211 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 TIGITQ495A1 244 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 ZFAND6Q6FIF0 208 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 PRSS54Q6PEW0 395 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 TOMM5Q8N4H5 51 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 SLC24A4Q8NFF2 622 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 HSPB7Q9UBY9 170 aa8.99□□□□□ -0.97
LIG1-217ENST00000599165 LOC102724200A0A096LPH7 203 aaPredicted RBP8.98□□□□□ -0.97
LIG1-217ENST00000599165 IGHV3-66A0A0C4DH42 116 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 LYL1P12980 280 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 CCR6P51684 374 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 SUB1P53999 127 aaKnown RBP eCLIP8.98□□□□□ -0.97
LIG1-217ENST00000599165 SMCO1Q147U7 214 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 LAMTOR1Q6IAA8 161 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 TMED4Q7Z7H5 227 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 FAM24BQ8N5W8 94 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 LRTM2Q8N967 370 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 SCGB3A2Q96PL1 93 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 ENY2Q9NPA8 101 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 HEYLQ9NQ87 328 aaPredicted RBP8.98□□□□□ -0.97
LIG1-217ENST00000599165 KCNIP3Q9Y2W7 256 aa8.98□□□□□ -0.97
LIG1-217ENST00000599165 OR4C46A6NHA9 309 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 CEBPZOSA8MTT3 80 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 DFFBO76075 338 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 S100A5P33763 92 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 BTCP35070 178 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 FAUP35544 74 aaKnown RBP8.97□□□□□ -0.97
LIG1-217ENST00000599165 RND2P52198 227 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 PPP1R1AQ13522 171 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 TMEM128Q5BJH2 165 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 TCF24Q7RTU0 167 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 APRG1Q8IVJ8 170 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 LGI3Q8N145 548 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 RNASEH2CQ8TDP1 164 aaKnown RBP8.97□□□□□ -0.97
LIG1-217ENST00000599165 DEDD2Q8WXF8 326 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 RBKSQ9H477 322 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 MAP6D1Q9H9H5 199 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 U3KQE9 123 aa8.97□□□□□ -0.97
LIG1-217ENST00000599165 IGKV3-7A0A075B6H7 116 aa8.96□□□□□ -0.98
LIG1-217ENST00000599165 SFT2D2O95562 160 aa8.96□□□□□ -0.98
LIG1-217ENST00000599165 NPY1RP25929 384 aa8.96□□□□□ -0.98
LIG1-217ENST00000599165 CRYBB3P26998 211 aa8.96□□□□□ -0.98
LIG1-217ENST00000599165 TFPI2P48307 235 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms