RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SDHCQ99643 169 aaPredicted RBP7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 TXN2Q99757 166 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 SRRQ9GZT4 340 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 MCUBQ9NWR8 336 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 PRR13Q9NZ81 148 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 TRAV25A0A0B4J276 109 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 LORP23490 312 aaPredicted RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 SNCAP37840 140 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 EIF2B2P49770 351 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 SPCS3P61009 180 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 HAGHQ16775 308 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 TOMM5Q8N4H5 51 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 DEFB125Q8N687 156 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 RNASE11Q8TAA1 199 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 PINX1Q96BK5 328 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 FAM210AQ96ND0 272 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 PDCD10Q9BUL8 212 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 WFDC10AQ9H1F0 79 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 TUBA4BQ9H853 241 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 DAZ1Q9NQZ3 744 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 GAR1Q9NY12 217 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 CACNG5Q9UF02 275 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 KCNIP3Q9Y2W7 256 aa7.7□□□□□ -1.18
CCDC88C-206ENST00000553437 SACSQ9NZJ4 4579 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 DNAH7Q8WXX0 4024 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 IGHV3OR16-8A0A075B7F1 116 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 RBMY1BA6NDE4 496 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 RBMY1EA6NEQ0 496 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 C15orf62A8K5M9 175 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 OR11H12B2RN74 326 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 NUPL2O15504 423 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 SCAF4O95104 1147 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 RBMY1DP0C7P1 496 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 AKR1C4P17516 323 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 HOXA1P49639 335 aaPredicted RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 AP3S2P59780 193 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 MLANAQ16655 118 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 NMSQ5H8A3 153 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 OR10C1Q96KK4 312 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 C20orf24Q9BUV8 137 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 FNDC4Q9H6D8 234 aaPredicted RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 ZMAT4Q9H898 229 aa7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 MRPL36Q9P0J6 103 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 PAIP2BQ9ULR5 123 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-206ENST00000553437 A0A0B4J2A0 478 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 ZNF207O43670 478 aaKnown RBP7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 TMEM50AO95807 157 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 IL7P13232 177 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 FAUP35544 74 aaKnown RBP7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 SUB1P53999 127 aaKnown RBP eCLIP7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 RELQ04864 619 aaPredicted RBP7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 ASAH1Q13510 395 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 LYZL2Q7Z4W2 148 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 AKAP14Q86UN6 197 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 DUSP18Q8NEJ0 188 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 TMEM170AQ8WVE7 144 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 DEDD2Q8WXF8 326 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 ENY2Q9NPA8 101 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 SHPKQ9UHJ6 478 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 SMPXQ9UHP9 88 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 TBC1D24Q9ULP9 559 aa7.68□□□□□ -1.18
CCDC88C-206ENST00000553437 IGHV7-4-1A0A0J9YVY3 117 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 CORTO00230 105 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 CHEK1O14757 476 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 TSPAN4O14817 238 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 GNG7O60262 68 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SULT1A3P0DMM9 295 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SULT1A4P0DMN0 295 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 HTR2BP41595 481 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 NPBWR1P48145 328 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 BAK1Q16611 211 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 C2orf83Q53S99 150 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 TOMM20LQ6UXN7 152 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 RBPMS2Q6ZRY4 209 aaKnown RBP7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SLC16A13Q7RTY0 426 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 LGI3Q8N145 548 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 OR52B4Q8NGK2 314 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 OR4X1Q8NH49 305 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 CITED4Q96RK1 184 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SPAG8Q99932 426 aaPredicted RBP7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SLC25A21Q9BQT8 299 aaPredicted RBP7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 SRD5A3Q9H8P0 318 aa7.67□□□□□ -1.18
CCDC88C-206ENST00000553437 RYR2Q92736 4967 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 A0A1B0GU03 582 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 CEBPZOSA8MTT3 80 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 CLN5O75503 358 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 YIF1AO95070 293 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 NXPH3O95157 252 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 ANXA3P12429 323 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 CCR6P51684 374 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 SRPXP78539 464 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 TNFRSF9Q07011 255 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 ANKRD55Q3KP44 614 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 TMEM128Q5BJH2 165 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 FAM90A2PQ658T7 463 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 LAMTOR1Q6IAA8 161 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 ZNF600Q6ZNG1 722 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 TMED4Q7Z7H5 227 aa7.66□□□□□ -1.18
CCDC88C-206ENST00000553437 TMEM116Q8NCL8 245 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms