RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SMIM10L2BP0DMW5 78 aa0.71□□□□□ -2.3
SMC4-223ENST00000493695 PRB4P10163 310 aaPredicted RBP0.71□□□□□ -2.3
SMC4-223ENST00000493695 SPANXN5Q5MJ07 72 aa0.71□□□□□ -2.3
SMC4-223ENST00000493695 BPIFA4PQ86YQ2 179 aa0.71□□□□□ -2.3
SMC4-223ENST00000493695 CLVS1Q8IUQ0 354 aaPredicted RBP0.71□□□□□ -2.3
SMC4-223ENST00000493695 DCSTAMPQ9H295 470 aa0.71□□□□□ -2.3
SMC4-223ENST00000493695 SNURFQ9Y675 71 aa0.71□□□□□ -2.3
SMC4-223ENST00000493695 TRAV9-1A0A075B6T8 112 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 A0A087WX48 190 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 OR1I1O60431 355 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 TCL1BO95988 128 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 SPI1P17947 270 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 RANP62826 216 aaKnown RBP0.7□□□□□ -2.3
SMC4-223ENST00000493695 CDK10Q15131 360 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 RHEBQ15382 184 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 PHF13Q86YI8 300 aaPredicted RBP0.7□□□□□ -2.3
SMC4-223ENST00000493695 HIST3H2BBQ8N257 126 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 LINC00311Q8N616 119 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 ANKRD29Q8N6D5 301 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 SIGLECL1Q8N7X8 197 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 OR5A1Q8NGJ0 315 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 DCUN1D1Q96GG9 259 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 RNF122Q9H9V4 155 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 ERGIC3Q9Y282 383 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 RP1P56715 2156 aa0.7□□□□□ -2.3
SMC4-223ENST00000493695 A0A087WUJ7 227 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 FAM236DA0A1B0GTK5 79 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 SMIM23A6NLE4 172 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 OR2B3O76000 313 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 BAALC-AS2P0C853 105 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 FAM236CP0DP71 79 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 RGS21Q2M5E4 152 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 IAH1Q2TAA2 248 aaPredicted RBP0.69□□□□□ -2.3
SMC4-223ENST00000493695 SPOPLQ6IQ16 392 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 MED12LQ86YW9 2145 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 OR4E2Q8NGC2 313 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 OR52R1Q8NGF1 315 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 C8orf76Q96K31 380 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 TMEM147Q9BVK8 224 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 TAS2R4Q9NYW5 299 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 NCOA1Q15788 1441 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 SBF1O95248 1867 aa0.69□□□□□ -2.3
SMC4-223ENST00000493695 M0R2N4 97 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 PIK3C2GO75747 1445 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 CNIH1O95406 144 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 BRS3P32247 399 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 OMPP47874 163 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 LSM6P62312 80 aaKnown RBP0.68□□□□□ -2.3
SMC4-223ENST00000493695 LINC01554Q52M75 96 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 KHDC3LQ587J8 217 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 DPPA3Q6W0C5 159 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 LINC00471Q8N535 108 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 ZNF418Q8TF45 676 aaPredicted RBP0.68□□□□□ -2.3
SMC4-223ENST00000493695 LINC00526Q96FQ7 95 aa0.68□□□□□ -2.3
SMC4-223ENST00000493695 ZNF106Q9H2Y7 1883 aaKnown RBP0.67□□□□□ -2.3
SMC4-223ENST00000493695 TRAV12-1A0A0B4J245 112 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 LYZL6O75951 148 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 ZNF682O95780 498 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 TCRBP04435 133 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 RBP1P09455 135 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 SSR2P43308 183 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 RHOGP84095 191 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 C12orf74Q32Q52 190 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 BORCS7Q96B45 105 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 MRPL57Q9BQC6 102 aaKnown RBP0.67□□□□□ -2.3
SMC4-223ENST00000493695 GINS4Q9BRT9 223 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 ULBP3Q9BZM4 244 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 SLC39A9Q9NUM3 307 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 HS3ST2Q9Y278 367 aa0.67□□□□□ -2.3
SMC4-223ENST00000493695 MED1Q15648 1581 aaPredicted RBP0.66□□□□□ -2.3
SMC4-223ENST00000493695 ECM29Q5VYK3 1845 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 TRAV1-1A0A0B4J248 108 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 PIRO00625 290 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 HYPMO75409 117 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 UBL3O95164 117 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 CRYZL1O95825 349 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 HAND1O96004 215 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 RAB4BP61018 213 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 EDDM3AQ14507 147 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 TRAPPC5Q8IUR0 188 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 OR6V1Q8N148 313 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 OR10J5Q8NHC4 309 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 DNAJC9Q8WXX5 260 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 CCDC42Q96M95 316 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 OBSCN-AS1Q96MR7 158 aa0.66□□□□□ -2.3
SMC4-223ENST00000493695 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.66□□□□□ -2.3
SMC4-223ENST00000493695 ZFYVE9O95405 1425 aa0.65□□□□□ -2.3
SMC4-223ENST00000493695 hADV38S2A0JD32 116 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 SMIM9A6NGZ8 99 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 INE1O15225 51 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 LYPLA2O95372 231 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 DEFA1P59665 94 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 YPEL3P61236 119 aaPredicted RBP0.65□□□□□ -2.31
SMC4-223ENST00000493695 CNBPP62633 177 aaKnown RBP0.65□□□□□ -2.31
SMC4-223ENST00000493695 GDPD1Q8N9F7 314 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 OR13D1Q8NGV5 346 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 CT55Q8WUE5 264 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 ADAT3Q96EY9 351 aaPredicted RBP0.65□□□□□ -2.31
SMC4-223ENST00000493695 NHP2Q9NX24 153 aaKnown RBP0.65□□□□□ -2.31
SMC4-223ENST00000493695 IDI2-AS1Q9NZ38 188 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms