RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 H7C1H1 209 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV3-20P01619 116 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 SAA2P0DJI9 122 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-203ENST00000372407 GPR183P32249 361 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 KLRB1Q12918 225 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 ST6GALNAC3Q8NDV1 305 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 PRO3102Q9H379 93 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 THADAQ6YHU6 1953 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 PDCD11Q14690 1871 aaKnown RBP9.54□□□□□ -0.88
PTPRF-203ENST00000372407 COL4A6Q14031 1691 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 CD5P06127 495 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 ASIPP42127 132 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 FER1L6-AS1Q8NA97 138 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 DEPPQ9NTK1 212 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 BDP1A6H8Y1 2624 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 DUTP33316 252 aaKnown RBP9.54□□□□□ -0.88
PTPRF-203ENST00000372407 CD69Q07108 199 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 CENPVQ7Z7K6 275 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-203ENST00000372407 ARPC1AQ92747 370 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 RNASE7Q9H1E1 156 aaKnown RBP9.54□□□□□ -0.88
PTPRF-203ENST00000372407 SCN8AQ9UQD0 1980 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 ATXN7O15265 892 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-203ENST00000372407 EFNA2O43921 213 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 ZIC4Q8N9L1 334 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 LRRK1Q38SD2 2015 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 ZFHX2Q9C0A1 2572 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-203ENST00000372407 TRBV24-1A0A075B6N3 115 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 MUC21A0A0G2JKD1 596 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 MUC21A0A140T8X8 626 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 LDLRAD4O15165 306 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 RAMP3O60896 148 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 SUPT4H1P63272 117 aaKnown RBP9.53□□□□□ -0.88
PTPRF-203ENST00000372407 MUC21Q5SSG8 566 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 PPP1R27Q86WC6 154 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 SEMA5BQ9P283 1151 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 ANK1P16157 1881 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 SUMO2P61956 95 aaKnown RBP9.53□□□□□ -0.88
PTPRF-203ENST00000372407 HEPN1Q6WQI6 88 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 OCC1Q8TAD7 63 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 DUX5Q96PT3 197 aa9.53□□□□□ -0.88
PTPRF-203ENST00000372407 IGHV3OR16-10A0A075B7F0 116 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 SNAI2O43623 268 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 ZFP36L1Q07352 338 aaKnown RBP9.52□□□□□ -0.88
PTPRF-203ENST00000372407 DMRTA1Q5VZB9 504 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 TCF23Q7RTU1 214 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 NIT1Q86X76 327 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 SCGB3A1Q96QR1 104 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 WFDC1Q9HC57 220 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 OTORQ9NRC9 128 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 LAMTOR2Q9Y2Q5 125 aa9.52□□□□□ -0.88
PTPRF-203ENST00000372407 WDR81Q562E7 1941 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 FABP5P3A8MUU1 101 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 ST6GALNAC6Q969X2 333 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 MESP1Q9BRJ9 268 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 GOLGB1Q14789 3259 aaKnown RBP9.52□□□□□ -0.89
PTPRF-203ENST00000372407 IGHV3-23P01764 117 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 CFHR1Q03591 330 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 FAM166AQ6J272 317 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 FGFBP3Q8TAT2 258 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 EPDR1Q9UM22 224 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 SIP14410 1827 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 IGHV3OR16-8A0A075B7F1 116 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 PRCDQ00LT1 54 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 EFNB3Q15768 340 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 ABHD17AQ96GS6 310 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 FOXC2Q99958 501 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 BEX4Q9NWD9 120 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-203ENST00000372407 TMEM242Q9NWH2 141 aa9.52□□□□□ -0.89
PTPRF-203ENST00000372407 FAM181BA6NEQ2 426 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 SRSF7Q16629 238 aaKnown RBP eCLIP9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TTC32Q5I0X7 151 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TEX38Q6PEX7 206 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 IGHV3-66A0A0C4DH42 116 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 FAM90A9PA6NNJ1 464 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 UBE2CO00762 179 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 DNAL4O96015 105 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 MRPS16Q9Y3D3 137 aaKnown RBP9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TRAV1-1A0A0B4J248 108 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 NBR2O15453 112 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 PVRIGQ6DKI7 326 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TMEM133Q9H2Q1 129 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 MRPL16Q9NX20 251 aaKnown RBP9.51□□□□□ -0.89
PTPRF-203ENST00000372407 ARFGEF3Q5TH69 2177 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TCRBV4S1A1TA0A5B7 111 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 PGPEP1LA6NFU8 196 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 COLCA2A8K830 154 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 ASCL2Q99929 193 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 CYTL1Q9NRR1 136 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 TNFRSF18Q9Y5U5 241 aa9.51□□□□□ -0.89
PTPRF-203ENST00000372407 DOCK8Q8NF50 2099 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-203ENST00000372407 NUTF2P61970 127 aaKnown RBP9.5□□□□□ -0.89
PTPRF-203ENST00000372407 RNF125Q96EQ8 232 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 MRAP2Q96G30 205 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 ADMP35318 185 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 NABP1Q96AH0 204 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 PHF3Q92576 2039 aaKnown RBP9.5□□□□□ -0.89
PTPRF-203ENST00000372407 PSMB11A5LHX3 300 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 PYYP10082 97 aa9.5□□□□□ -0.89
PTPRF-203ENST00000372407 CYB5R2Q6BCY4 276 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 1582.7 ms