RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 MRPL36Q9P0J6 103 aaKnown RBP14.69□□□□□ -0.06
CLN3-204ENST00000357857 IGLV11-55A0A075B6I3 123 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 IGKV1OR2-108A0A075B7D4 117 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 IGHV3-21A0A0B4J1V1 117 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 SOX15O60248 233 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 IGHG2P01859 326 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 HNF1AP20823 631 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 RND2P52198 227 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 CRIP2P52943 208 aaPredicted RBP14.69□□□□□ -0.06
CLN3-204ENST00000357857 ZNF616Q08AN1 781 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 SLC35E3Q7Z769 313 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 COMMD7Q86VX2 200 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 FANCD2OSQ96PS1 177 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 RPRMQ9NS64 109 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 PXMP4Q9Y6I8 212 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 ACANP16112 2415 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 HOXA3O43365 443 aaPredicted RBP14.68□□□□□ -0.06
CLN3-204ENST00000357857 ATP6V1G1O75348 118 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 MBP02144 154 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 BLCAPP62952 87 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 MIC13Q5XKP0 118 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 SIGLECL1Q8N7X8 197 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 THAP8Q8NA92 274 aa14.68□□□□□ -0.06
CLN3-204ENST00000357857 G3V318 75 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 TEX46H3BTG2 121 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 K7EIM0 57 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 TSPAN15O95858 294 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 OR10J1P30954 320 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 RPL29P47914 159 aaKnown RBP14.67□□□□□ -0.06
CLN3-204ENST00000357857 RAB2AP61019 212 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 TMEM116Q8NCL8 245 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 HRH4Q9H3N8 390 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 SLC45A2Q9UMX9 530 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 ZFHX3Q15911 3703 aa14.67□□□□□ -0.06
CLN3-204ENST00000357857 TRAV41A0A0B4J266 112 aa14.66□□□□□ -0.06
CLN3-204ENST00000357857 HIST1H1BP16401 226 aaKnown RBP14.66□□□□□ -0.06
CLN3-204ENST00000357857 ACOT6Q3I5F7 207 aaPredicted RBP14.66□□□□□ -0.06
CLN3-204ENST00000357857 THYN1Q9P016 225 aa14.66□□□□□ -0.06
CLN3-204ENST00000357857 IGF1P05019 195 aa14.66□□□□□ -0.06
CLN3-204ENST00000357857 B2MP61769 119 aa14.66□□□□□ -0.06
CLN3-204ENST00000357857 STPG3Q8N7X2 389 aa14.66□□□□□ -0.06
CLN3-204ENST00000357857 ZFP92A6NM28 416 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 H2AFB1P0C5Y9 115 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 M6PRP20645 277 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 PRR20EP86478 221 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 PRR20CP86479 221 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 PRR20DP86480 221 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 PRR20BP86481 221 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 PRR20AP86496 221 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 C19orf54Q5BKX5 351 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 CYP2G1PQ6ZSU1 146 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 OR10G4Q8NGN3 311 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 OR10G9Q8NGN4 311 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 OR10G7Q8NGN6 311 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 OR4X1Q8NH49 305 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 LYPD6BQ8NI32 183 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 SLC39A9Q9NUM3 307 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 TMEM160Q9NX00 188 aa14.65□□□□□ -0.06
CLN3-204ENST00000357857 IGKV1D-37A0A075B6S9 117 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 TCRBV4S1A1TA0A5B7 111 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 OR2J3O76001 311 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 YIF1AO95070 293 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 KLK9Q2XQG4 91 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 Q6ZS46 218 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 BPIFCQ8NFQ6 507 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 RCC1LQ96I51 464 aaKnown RBP14.64□□□□□ -0.07
CLN3-204ENST00000357857 ZNF355PQ9NSJ1 428 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 LINC00527Q9UJ94 153 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 KLK9Q9UKQ9 250 aa14.64□□□□□ -0.07
CLN3-204ENST00000357857 SONP18583 2426 aaKnown RBP14.64□□□□□ -0.07
CLN3-204ENST00000357857 AP4M1O00189 453 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 NDUFB8O95169 186 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 LINC00869P0C866 280 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 RPP25LQ8N5L8 163 aaKnown RBP14.63□□□□□ -0.07
CLN3-204ENST00000357857 CITED4Q96RK1 184 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 TRGV9Q99603 122 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 SMR3AQ99954 134 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 FBXL7Q9UJT9 491 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 NUDT19A8MXV4 375 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 ZNF726P1Q15940 193 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 GCSAMLQ5JQS6 135 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 FAM122CQ6P4D5 195 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 RBMS3Q6XE24 437 aaKnown RBP14.63□□□□□ -0.07
CLN3-204ENST00000357857 IL34Q6ZMJ4 242 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 TMEM86BQ8N661 226 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 SFT2D1Q8WV19 159 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 MARC2Q969Z3 335 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 ACTR3CQ9C0K3 210 aaPredicted RBP14.63□□□□□ -0.07
CLN3-204ENST00000357857 MAST4O15021 2626 aa14.63□□□□□ -0.07
CLN3-204ENST00000357857 MFSD2BA6NFX1 497 aa14.62□□□□□ -0.07
CLN3-204ENST00000357857 LY6G6DO95868 133 aa14.62□□□□□ -0.07
CLN3-204ENST00000357857 GATA2P23769 480 aaPredicted RBP14.62□□□□□ -0.07
CLN3-204ENST00000357857 ZNF90Q03938 601 aa14.62□□□□□ -0.07
CLN3-204ENST00000357857 NOL4LQ96MY1 436 aaPredicted RBP14.62□□□□□ -0.07
CLN3-204ENST00000357857 TRBV9A0A0B4J1U6 114 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 A0A1B0GV50 99 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 CLN5O75503 358 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 HBE1P02100 147 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 MFAP4P55083 255 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 SELENOTP62341 195 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms