RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 RPUSD4Q96CM3 377 aaKnown RBP13.23□□□□□ -0.29
CCDC40-201ENST00000269318 SLC25A33Q9BSK2 321 aa13.23□□□□□ -0.29
CCDC40-201ENST00000269318 NAT8Q9UHE5 227 aa13.23□□□□□ -0.29
CCDC40-201ENST00000269318 SPTAN1Q13813 2472 aaKnown RBP13.22□□□□□ -0.29
CCDC40-201ENST00000269318 VWC2LB2RUY7 222 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 PDE6DO43924 150 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 CRYBA1P05813 215 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 C5orf64Q2M2E5 130 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 TMEM116Q8NCL8 245 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 C10orf105Q8TEF2 133 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 FAM168AQ92567 244 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 TXNDC17Q9BRA2 123 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 ZFYVE26Q68DK2 2539 aa13.22□□□□□ -0.29
CCDC40-201ENST00000269318 OR2C1O95371 312 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 MT-CO2P00403 227 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 MT-ND4LP03901 98 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 ZNF90Q03938 601 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 HES1Q14469 280 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 ZNF674Q2M3X9 581 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 CST9LP1Q5W188 147 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 OR51G1Q8NGK1 321 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 PIMREGQ9BSJ6 248 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 YTHDF2Q9Y5A9 579 aaKnown RBP13.21□□□□□ -0.29
CCDC40-201ENST00000269318 IGHV4-61A0A0C4DH41 118 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 NDUFS8O00217 210 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 CLN5O75503 358 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 CNIH1O95406 144 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 FOLR2P14207 255 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 MALSU1Q96EH3 234 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 ZNF503Q96F45 646 aa13.21□□□□□ -0.29
CCDC40-201ENST00000269318 TECRQ9NZ01 308 aaKnown RBP13.21□□□□□ -0.29
CCDC40-201ENST00000269318 CTRB1P17538 263 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 SELENOTP62341 195 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 SRSF1Q07955 248 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC40-201ENST00000269318 TMEM241Q24JQ0 296 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 CTRB2Q6GPI1 263 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 FAM24BQ8N5W8 94 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 MRPL32Q9BYC8 188 aaKnown RBP13.2□□□□□ -0.3
CCDC40-201ENST00000269318 CXorf65A6NEN9 183 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 F6UZH7 168 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 KIAA0141Q14154 515 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-201ENST00000269318 FXYD3Q14802 87 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 TRGV9Q99603 122 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 LPAR2Q9HBW0 351 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 DNAJC4Q9NNZ3 241 aa13.2□□□□□ -0.3
CCDC40-201ENST00000269318 I3L2K1 104 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 SAA4P35542 130 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 ATP5J2P56134 94 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 RPL23P62829 140 aaKnown RBP13.19□□□□□ -0.3
CCDC40-201ENST00000269318 PAX8Q06710 450 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 RNF212Q495C1 297 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 PATE2Q6UY27 113 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 PQLC2Q6ZP29 291 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 WNT10AQ9GZT5 417 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 TNFRSF19Q9NS68 423 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 TMEM242Q9NWH2 141 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 ARL2-SNX15V9GYD0 113 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 ZNF462Q96JM2 2506 aa13.19□□□□□ -0.3
CCDC40-201ENST00000269318 C8orf88P0DMB2 117 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 TAS2R45P59539 299 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 MORN5Q5VZ52 161 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 ZNF562Q6V9R5 426 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 C22orf15Q8WYQ4 148 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 FAM167A-AS1Q96KT0 104 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 RNF2Q99496 336 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 MED13LQ71F56 2210 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 IGHV3-21A0A0B4J1V1 117 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 TMEM11P17152 192 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 FLI1Q01543 452 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-201ENST00000269318 CLEC2AQ6UVW9 174 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 OR1L4Q8NGR5 311 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 PFDN5Q99471 154 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 FAM103A1Q9BTL3 118 aaKnown RBP13.18□□□□□ -0.3
CCDC40-201ENST00000269318 TMEM167BQ9NRX6 74 aa13.18□□□□□ -0.3
CCDC40-201ENST00000269318 MYO18BQ8IUG5 2567 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 UBR5O95071 2799 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-201ENST00000269318 NDUFB4O95168 129 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 RAB5AP20339 215 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 CX3CL1P78423 397 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 ELOBQ15370 118 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 ADIRFQ15847 76 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 PIP4P2Q8N4L2 257 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 OR4X1Q8NH49 305 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 SLC25A2Q9BXI2 301 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 DOK5Q9P104 306 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 MLXQ9UH92 298 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 WNK2Q9Y3S1 2297 aa13.17□□□□□ -0.3
CCDC40-201ENST00000269318 IGHV4-30-2A0A087WSY4 118 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 CENPVL3A0A0U1RRI6 287 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 NCBP2LA6PVI3 153 aaKnown RBP13.16□□□□□ -0.3
CCDC40-201ENST00000269318 NPFFO15130 113 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 COX7A2P2O60397 106 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 NDPQ00604 133 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 FAM120AOSQ5T036 256 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 ASPHD1Q5U4P2 390 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 C10orf113Q5VZT2 155 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 ZNF343Q6P1L6 599 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 DERL1Q9BUN8 251 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 VPS13CQ709C8 3753 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 ABCA2Q9BZC7 2435 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms