RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 GRAMD2BQ96HH9 432 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 FAM210BQ96KR6 192 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 GINS3Q9BRX5 216 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 YTHDF1Q9BYJ9 559 aaKnown RBP9.14□□□□□ -0.95
VPS29-211ENST00000553128 KRTAP3-3Q9BYR6 98 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 KRTAP3-2Q9BYR7 98 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 PLEKHA2Q9HB19 425 aa9.14□□□□□ -0.95
VPS29-211ENST00000553128 PUS1Q9Y606 427 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS29-211ENST00000553128 NBDYA0A0U1RRE5 68 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 IFITM5A6NNB3 132 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 MARCH11A6NNE9 402 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 PTGES3LE9PB15 166 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 HSMCR30P0CW71 290 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 MSMO1Q15800 293 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 RAB40CQ96S21 281 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 TXN2Q99757 166 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 SLC5A7Q9GZV3 580 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 DKK2Q9UBU2 259 aa9.13□□□□□ -0.95
VPS29-211ENST00000553128 METTL21EPA6NDL7 271 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 GNG7O60262 68 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 PPYP01298 95 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 FXYD4P59646 89 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 CATR1Q13166 79 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 RCN1Q15293 331 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 FAM222AQ5U5X8 452 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 AADACL3Q5VUY0 350 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 ZNF705AQ6ZN79 300 aaPredicted RBP9.12□□□□□ -0.95
VPS29-211ENST00000553128 PINX1Q96BK5 328 aaKnown RBP9.12□□□□□ -0.95
VPS29-211ENST00000553128 COMMD9Q9P000 198 aa9.12□□□□□ -0.95
VPS29-211ENST00000553128 KRASP01116 189 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 G6PCP35575 357 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 PPP5CP53041 499 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 PSMG4Q5JS54 123 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 ZBTB34Q8NCN2 500 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 ZNRF2Q8NHG8 242 aa9.11□□□□□ -0.95
VPS29-211ENST00000553128 IGHV3OR16-12A0A075B7B8 117 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 SMIM30A4D0T7 59 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 ZNF705FA8MVS1 300 aaPredicted RBP9.1□□□□□ -0.95
VPS29-211ENST00000553128 FCER2P06734 321 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 ZNF705DP0CH99 300 aaPredicted RBP9.1□□□□□ -0.95
VPS29-211ENST00000553128 ZNF705BP0CI00 300 aaPredicted RBP9.1□□□□□ -0.95
VPS29-211ENST00000553128 P2RY1P47900 373 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 GNG2P59768 71 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 ERVK-16P61578 105 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 ZNF600Q6ZNG1 722 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 TMEM17Q86X19 198 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 FCAMRQ8WWV6 532 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 MOB3AQ96BX8 217 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 TMEM56Q96MV1 263 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 NEU1Q99519 415 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 NIPSNAP3BQ9BS92 247 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 RNF167Q9H6Y7 350 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 TMED3Q9Y3Q3 217 aa9.1□□□□□ -0.95
VPS29-211ENST00000553128 HMCN2Q8NDA2 5059 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 H3BMM0 161 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 NPPCP23582 126 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 LPAR6P43657 344 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 FXYD7P58549 80 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 ARPC4P59998 168 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 ARL6IP1Q15041 203 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 TRAM1Q15629 374 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 TMEM231Q9H6L2 316 aa9.09□□□□□ -0.95
VPS29-211ENST00000553128 MRPL36Q9P0J6 103 aaKnown RBP9.09□□□□□ -0.95
VPS29-211ENST00000553128 HELTA6NFD8 242 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 SNAPC5O75971 98 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 TMEM50AO95807 157 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 RLN1P04808 185 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 PSMA1P25786 263 aaKnown RBP9.08□□□□□ -0.96
VPS29-211ENST00000553128 CRYBB3P26998 211 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 GNRHRP30968 328 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 FGF9P31371 208 aaPredicted RBP9.08□□□□□ -0.96
VPS29-211ENST00000553128 RANBP1P43487 201 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 FAM3BP58499 235 aaPredicted RBP9.08□□□□□ -0.96
VPS29-211ENST00000553128 DEFB1P60022 68 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 DHRS2Q13268 280 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 ZNF114Q8NC26 417 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 BEST4Q8NFU0 473 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 ATG101Q9BSB4 218 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 C1QTNF4Q9BXJ3 329 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 PRNDQ9UKY0 176 aa9.08□□□□□ -0.96
VPS29-211ENST00000553128 SRRM2Q9UQ35 2752 aaKnown RBP9.08□□□□□ -0.96
VPS29-211ENST00000553128 FLG2Q5D862 2391 aaPredicted RBP9.07□□□□□ -0.96
VPS29-211ENST00000553128 TRAV1-2A0A0B4J238 106 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 TMEM189A5PLL7 270 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 ERICH4A6NGS2 130 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 PDCD5O14737 125 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 F2RP25116 425 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 MLLT11Q13015 90 aaPredicted RBP9.07□□□□□ -0.96
VPS29-211ENST00000553128 GDF5OSQ5U4N7 250 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 METTL26Q96S19 204 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 KRTAP1-5Q9BYS1 174 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 ACOT13Q9NPJ3 140 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 RFNGQ9Y644 331 aa9.07□□□□□ -0.96
VPS29-211ENST00000553128 A0A1W2PS18 150 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 PGLYRP1O75594 196 aaPredicted RBP9.06□□□□□ -0.96
VPS29-211ENST00000553128 IGKV3-20P01619 116 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 RAB3BP20337 219 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 FUSP35637 526 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS29-211ENST00000553128 NPBWR1P48145 328 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 NUTF2P61970 127 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 183.6 ms