RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 DEFA3P59666 94 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 KRTAP13-4Q3LI77 160 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 TMEM155Q4W5P6 130 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 PCOTHQ58A44 107 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 TERB2Q8NHR7 220 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 PTPRBP23467 1997 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 TTC21AQ8NDW8 1320 aa3.08□□□□□ -1.92
NUP54-215ENST00000514313 DENND4BO75064 1496 aaPredicted RBP3.08□□□□□ -1.92
NUP54-215ENST00000514313 SCAF11Q99590 1463 aaKnown RBP3.08□□□□□ -1.92
NUP54-215ENST00000514313 MEIS3P1A6NDR6 274 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 G6PCP35575 357 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 FXYD2P54710 66 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 PXT1Q8NFP0 134 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 OPTCQ9UBM4 332 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 CPAMD8Q8IZJ3 1885 aa3.07□□□□□ -1.92
NUP54-215ENST00000514313 OVOL1O14753 267 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 ZNF737O75373 536 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 OR2B3O76000 313 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 OR2J2O76002 312 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 SMIM17P0DL12 118 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 IFI30P13284 250 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 CYBAP13498 195 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 HEATR5AQ86XA9 2040 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 CLVS1Q8IUQ0 354 aaPredicted RBP3.06□□□□□ -1.92
NUP54-215ENST00000514313 OR52R1Q8NGF1 315 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 SLC25A40Q8TBP6 338 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 DNAJC9Q8WXX5 260 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 TMEM106AQ96A25 262 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 HSPB9Q9BQS6 159 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 KIF13BQ9NQT8 1826 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 ARMC1Q9NVT9 282 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 BAIAP2Q9UQB8 552 aa3.06□□□□□ -1.92
NUP54-215ENST00000514313 KIF24Q5T7B8 1368 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 PPIBP23284 216 aaKnown RBP3.05□□□□□ -1.92
NUP54-215ENST00000514313 TMEM86AQ8N2M4 240 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 OR11H6Q8NGC7 330 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 C11orf40Q8WZ69 217 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 SCGB3A1Q96QR1 104 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 C8orf4Q9NR00 106 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 SLC39A9Q9NUM3 307 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 IL20Q9NYY1 176 aa3.05□□□□□ -1.92
NUP54-215ENST00000514313 ORC5O43913 435 aa3.04□□□□□ -1.92
NUP54-215ENST00000514313 CIAO1O76071 339 aa3.04□□□□□ -1.92
NUP54-215ENST00000514313 CDC42P60953 191 aa3.04□□□□□ -1.92
NUP54-215ENST00000514313 PFN4Q8NHR9 129 aa3.04□□□□□ -1.92
NUP54-215ENST00000514313 HIVEP2P31629 2446 aa3.04□□□□□ -1.92
NUP54-215ENST00000514313 PPP1R2P41236 205 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 MAGEA12P43365 314 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 SERPINB9P50453 376 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 PPP1R2P3Q6NXS1 205 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 DHRS4L2Q6PKH6 230 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 Q6Q795 121 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 MIR17HGQ75NE6 70 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 C9orf163Q8N9P6 203 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 GNPDA2Q8TDQ7 276 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 ERGIC3Q9Y282 383 aa3.03□□□□□ -1.92
NUP54-215ENST00000514313 AMMECR1Q9Y4X0 333 aaPredicted RBP3.03□□□□□ -1.92
NUP54-215ENST00000514313 NEO1Q92859 1461 aa3.03□□□□□ -1.93
NUP54-215ENST00000514313 RTL1A6NKG5 1358 aa3.02□□□□□ -1.93
NUP54-215ENST00000514313 CLPSP04118 112 aa3.02□□□□□ -1.93
NUP54-215ENST00000514313 OR8B3Q8NGG8 313 aa3.02□□□□□ -1.93
NUP54-215ENST00000514313 GINS4Q9BRT9 223 aa3.02□□□□□ -1.93
NUP54-215ENST00000514313 CCDC88AQ3V6T2 1871 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 ZNF860A6NHJ4 632 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 IBA57-AS1B1ANH7 110 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 IGKV1-16P04430 117 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 NEFHP12036 1026 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 ERP29P30040 261 aaKnown RBP3.01□□□□□ -1.93
NUP54-215ENST00000514313 NDUFA5Q16718 116 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 LCN15Q6UWW0 184 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 Q6ZRN7 208 aaPredicted RBP3.01□□□□□ -1.93
NUP54-215ENST00000514313 DHFR2Q86XF0 187 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 C2orf50Q96LR7 162 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 PARVBQ9HBI1 364 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 TVP23BQ9NYZ1 205 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 STOML2Q9UJZ1 356 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 STRCP1A6NGW2 1772 aa3.01□□□□□ -1.93
NUP54-215ENST00000514313 MDC1Q14676 2089 aaKnown RBP3□□□□□ -1.93
NUP54-215ENST00000514313 CACNA1GO43497 2377 aa3□□□□□ -1.93
NUP54-215ENST00000514313 METTL15P1P0C7V9 234 aa3□□□□□ -1.93
NUP54-215ENST00000514313 CASP1P29466 404 aa3□□□□□ -1.93
NUP54-215ENST00000514313 S100A5P33763 92 aa3□□□□□ -1.93
NUP54-215ENST00000514313 C7orf65Q6ZTY9 151 aa3□□□□□ -1.93
NUP54-215ENST00000514313 AP3S1Q92572 193 aa3□□□□□ -1.93
NUP54-215ENST00000514313 GBF1Q92538 1859 aa3□□□□□ -1.93
NUP54-215ENST00000514313 NUMA1Q14980 2115 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 DOCK3Q8IZD9 2030 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 CLDN25C9JDP6 229 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 LINC01554Q52M75 96 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 FAM173BQ6P4H8 233 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 GOLT1AQ6ZVE7 132 aa2.99□□□□□ -1.93
NUP54-215ENST00000514313 ZNF625Q96I27 306 aaPredicted RBP2.99□□□□□ -1.93
NUP54-215ENST00000514313 SCN10AQ9Y5Y9 1956 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 PMP2P02689 132 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 S100A4P26447 101 aaKnown RBP2.98□□□□□ -1.93
NUP54-215ENST00000514313 HSPE1P61604 102 aaKnown RBP2.98□□□□□ -1.93
NUP54-215ENST00000514313 ZNF345Q14585 488 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 ARHGAP11BQ3KRB8 267 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 LCA10Q71F78 164 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 HIST3H2BBQ8N257 126 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms