RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ARL16Q0P5N6 197 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 ATP6V1FQ16864 119 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 OR8G2PQ6IF36 304 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 ETV3LQ6ZN32 361 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 HAPLN4Q86UW8 402 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 OR10P1Q8NGE3 313 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 ABHD5Q8WTS1 349 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 TMEM170AQ8WVE7 144 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 SSMEM1Q8WWF3 244 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 ARPC1AQ92747 370 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 PINX1Q96BK5 328 aaKnown RBP10.85□□□□□ -0.67
CCDC40-209ENST00000573474 ZNF48Q96MX3 618 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-209ENST00000573474 WFDC1Q9HC57 220 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 SVEP1Q4LDE5 3571 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 DFFBO76075 338 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 LY6G6DO95868 133 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 IFNA4P05014 189 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 RNASE2P10153 161 aaKnown RBP10.84□□□□□ -0.67
CCDC40-209ENST00000573474 IFITM2Q01629 132 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 CLINT1Q14677 625 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 TUSC1Q2TAM9 212 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 RPL7L1Q6DKI1 246 aaKnown RBP10.84□□□□□ -0.67
CCDC40-209ENST00000573474 STOML3Q8TAV4 291 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 ATP5SQ99766 215 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 TMUB1Q9BVT8 246 aa10.84□□□□□ -0.67
CCDC40-209ENST00000573474 ZNF469Q96JG9 3925 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-209ENST00000573474 FLNBO75369 2602 aaKnown RBP10.83□□□□□ -0.68
CCDC40-209ENST00000573474 AMY1AP04745 511 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 TPT1P13693 172 aaKnown RBP10.83□□□□□ -0.68
CCDC40-209ENST00000573474 CD99P14209 185 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 AREGP15514 252 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 SCGB2A2Q13296 93 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 ZNF266Q14584 549 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 LILRB2Q8N423 598 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 UBAC2Q8NBM4 344 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 ZNF114Q8NC26 417 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 ST8SIA2Q92186 375 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 P2RX4Q99571 388 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 HSPB9Q9BQS6 159 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 GGACTQ9BVM4 153 aa10.83□□□□□ -0.68
CCDC40-209ENST00000573474 IFNA5P01569 189 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 REG1AP05451 166 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 EGR2P11161 476 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-209ENST00000573474 NDPQ00604 133 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 PVRIGQ6DKI7 326 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 TEX261Q6UWH6 196 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 BAP18Q8IXM2 172 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 TMEM86BQ8N661 226 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 SIGLECL1Q8N7X8 197 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 OR1P1Q8NH06 330 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 RNASEH2CQ8TDP1 164 aaKnown RBP10.82□□□□□ -0.68
CCDC40-209ENST00000573474 SMR3AQ99954 134 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 FAM103A1Q9BTL3 118 aaKnown RBP10.82□□□□□ -0.68
CCDC40-209ENST00000573474 TMEM147Q9BVK8 224 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 VPREB3Q9UKI3 123 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 OTOGQ6ZRI0 2925 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 CELSR1Q9NYQ6 3014 aa10.82□□□□□ -0.68
CCDC40-209ENST00000573474 NPIPB5A8MRT5 1133 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 PRSS46E5RG02 174 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 HOXA3O43365 443 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-209ENST00000573474 CFDP00746 253 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-209ENST00000573474 IFNA7P01567 189 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 CRYGCP07315 174 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 APELAP0DMC3 54 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 CTRB1P17538 263 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 DLK1P80370 383 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 CTRB2Q6GPI1 263 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 RBMS3Q6XE24 437 aaKnown RBP10.81□□□□□ -0.68
CCDC40-209ENST00000573474 TTC9CQ8N5M4 171 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 OR1L6Q8NGR2 347 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 SGMS2Q8NHU3 365 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 TMEM68Q96MH6 324 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 ARV1Q9H2C2 271 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 PARP11Q9NR21 331 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 UQCC1Q9NVA1 299 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 F11RQ9Y624 299 aaKnown RBP10.81□□□□□ -0.68
CCDC40-209ENST00000573474 BAHCC1Q9P281 2608 aa10.81□□□□□ -0.68
CCDC40-209ENST00000573474 ACANP16112 2415 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 SH2D7A6NKC9 451 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-209ENST00000573474 FNDC10F2Z333 226 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 PLXNB1O43157 2135 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 TSPAN9O75954 239 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 GPX4P36969 197 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-209ENST00000573474 VWC2Q2TAL6 325 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 C9orf152Q5JTZ5 239 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 ASPHD1Q5U4P2 390 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 SLC25A24Q6NUK1 477 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 ZNF767PQ75MW2 155 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 ZNF680Q8NEM1 530 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 LFNGQ8NES3 379 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 SCGB1C1Q8TD33 95 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 PHYHIPLQ96FC7 376 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 GINS3Q9BRX5 216 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 PARD6GQ9BYG4 376 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-209ENST00000573474 WNT10AQ9GZT5 417 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 TNFRSF19Q9NS68 423 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 FBXO7Q9Y3I1 522 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 NAV3Q8IVL0 2385 aa10.8□□□□□ -0.68
CCDC40-209ENST00000573474 TLN2Q9Y4G6 2542 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 LINC01548A6NM66 108 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms