RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CLEC7AQ9BXN2 247 aa17.48■□□□□ 0.39
USP48-205ENST00000421625 DEFB127Q9H1M4 99 aa17.48■□□□□ 0.39
USP48-205ENST00000421625 GCM1Q9NP62 436 aa17.48■□□□□ 0.39
USP48-205ENST00000421625 MED13Q9UHV7 2174 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 TRGV8A0A0C4DH27 118 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 MEOX1P50221 254 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 DUSP3P51452 185 aaPredicted RBP17.47■□□□□ 0.39
USP48-205ENST00000421625 SLAQ13239 276 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 IBA57Q5T440 356 aaKnown RBP17.47■□□□□ 0.39
USP48-205ENST00000421625 FAM90A1Q86YD7 464 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 ZNF439Q8NDP4 499 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 ORAOV1Q8WV07 137 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 CXXC4Q9H2H0 198 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.47■□□□□ 0.39
USP48-205ENST00000421625 HLA-DQA1P01909 254 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 APCSP02743 223 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 TSPOP30536 169 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 NABP2Q9BQ15 211 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 HINT2Q9BX68 163 aa17.47■□□□□ 0.39
USP48-205ENST00000421625 C15orf61A6NNL5 157 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 OR7C2O60412 319 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 IGHV1-2P23083 117 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 FAM168AQ92567 244 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 LEAP2Q969E1 77 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 BORCS7Q96B45 105 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 SMIM27A0A1W2PRY6 76 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 ISLRO14498 428 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 SMIM21Q3B7S5 101 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 SPOCK3Q9BQ16 436 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 IFI27L2Q9H2X8 130 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 SLC35D1Q9NTN3 355 aa17.46■□□□□ 0.39
USP48-205ENST00000421625 COTL1Q14019 142 aa17.45■□□□□ 0.38
USP48-205ENST00000421625 C18orf32Q8TCD1 76 aa17.45■□□□□ 0.38
USP48-205ENST00000421625 SSBP3Q9BWW4 388 aaPredicted RBP17.45■□□□□ 0.38
USP48-205ENST00000421625 TMEM167BQ9NRX6 74 aa17.45■□□□□ 0.38
USP48-205ENST00000421625 SLC25A10Q9UBX3 287 aaPredicted RBP17.45■□□□□ 0.38
USP48-205ENST00000421625 AGFG2O95081 481 aa17.45■□□□□ 0.38
USP48-205ENST00000421625 USF1P22415 310 aaPredicted RBP17.45■□□□□ 0.38
USP48-205ENST00000421625 KLHDC1Q8N7A1 406 aa17.45■□□□□ 0.38
USP48-205ENST00000421625 REG1AP05451 166 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 RBX1P62877 108 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 STUMQ69YW2 141 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 NEUROG1Q92886 237 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 SP9P0CG40 484 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 PRDX2P32119 198 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 COX19Q49B96 90 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 C19orf35Q6ZS72 473 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 IGF2BP2-AS1Q96M15 143 aa17.44■□□□□ 0.38
USP48-205ENST00000421625 IGKV1OR2-108A0A075B7D4 117 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 TIMM8AO60220 97 aaPredicted RBP17.43■□□□□ 0.38
USP48-205ENST00000421625 LEMD1Q68G75 181 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 OR4A47Q6IF82 309 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 LRRC29Q8WV35 223 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 DUSP13Q9UII6 198 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 JPT1Q9UK76 154 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 NKX6-3A6NJ46 265 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 FABP6P51161 128 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 TNXAQ16473 311 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 DDB2Q92466 427 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 PLEKHA3Q9HB20 300 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 TECRQ9NZ01 308 aaKnown RBP17.43■□□□□ 0.38
USP48-205ENST00000421625 SPRR3Q9UBC9 169 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 ARL2-SNX15V9GYD0 113 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 LOXL3P58215 753 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 ARG2P78540 354 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 LINC00479Q96M42 142 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 ENY2Q9NPA8 101 aa17.43■□□□□ 0.38
USP48-205ENST00000421625 DSPP15924 2871 aaKnown RBP17.42■□□□□ 0.38
USP48-205ENST00000421625 IZUMO1RA6ND01 250 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 HSPE1P61604 102 aaKnown RBP17.42■□□□□ 0.38
USP48-205ENST00000421625 TRAT1Q6PIZ9 186 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 TMEM14BQ9NUH8 114 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 ABI3Q9P2A4 366 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 COX11Q9Y6N1 276 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 PPOXP50336 477 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 OR4S2Q8NH73 311 aa17.42■□□□□ 0.38
USP48-205ENST00000421625 ZNF331Q9NQX6 463 aaPredicted RBP17.42■□□□□ 0.38
USP48-205ENST00000421625 Q56UQ5 140 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 EBLN2Q6P2I7 272 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 KLF3P57682 345 aaPredicted RBP17.41■□□□□ 0.38
USP48-205ENST00000421625 SELENOVP59797 346 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 UBE2V1Q13404 147 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 PRR31Q5SQ13 230 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 GDF5OSQ5U4N7 250 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 SPACA3Q8IXA5 215 aa17.41■□□□□ 0.38
USP48-205ENST00000421625 FOXA2Q9Y261 457 aaPredicted RBP17.41■□□□□ 0.38
USP48-205ENST00000421625 MRPS16Q9Y3D3 137 aaKnown RBP17.41■□□□□ 0.38
USP48-205ENST00000421625 IGKV1D-17A0A075B6S4 117 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 IGHV2-26A0A0B4J1V2 119 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 IDI2-AS1Q9NZ38 188 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 IGHV3OR15-7A0A075B7D8 119 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 TOMM40O96008 361 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 MLANAQ16655 118 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 BET1LQ9NYM9 111 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 TP73-AS1Q9UF72 201 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 TNCP24821 2201 aa17.4■□□□□ 0.38
USP48-205ENST00000421625 FAM181BA6NEQ2 426 aa17.39■□□□□ 0.38
USP48-205ENST00000421625 RNFT1Q5M7Z0 435 aa17.39■□□□□ 0.38
USP48-205ENST00000421625 MRPL27Q9P0M9 148 aaKnown RBP17.39■□□□□ 0.38
USP48-205ENST00000421625 LOC400499M0QZD8 3231 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 303.5 ms