RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NPY1RP25929 384 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 TRAT1Q6PIZ9 186 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 FAM216BQ8N7L0 139 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 RNASE7Q9H1E1 156 aaKnown RBP8.03□□□□□ -1.12
SS18-203ENST00000415083 GCM1Q9NP62 436 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 PPIAL4AQ9Y536 164 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 VPS13CQ709C8 3753 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 IGLV3-9A0A075B6K5 115 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 NPSP0C0P6 89 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 IRF2P14316 349 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 TDGF1P3P51864 188 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 HSPE1P61604 102 aaKnown RBP8.03□□□□□ -1.12
SS18-203ENST00000415083 ALKBH2Q6NS38 261 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 TEPPQ6URK8 271 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 FAM168AQ92567 244 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 IGF2BP2-AS1Q96M15 143 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 TMEM68Q96MH6 324 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 FAM103A1Q9BTL3 118 aaKnown RBP8.03□□□□□ -1.12
SS18-203ENST00000415083 K7EM74 188 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 CCKARP32238 428 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 GNG10P50151 68 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 SLC35B1P78383 322 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 DIAPH2-AS1Q14236 149 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 POU2AF1Q16633 256 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 DOLPP1Q86YN1 238 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 OR9G1Q8NH87 305 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 VN1R17PQ8TDU5 208 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 RCHY1Q96PM5 261 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 LRFN3Q9BTN0 628 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 MRPL18Q9H0U6 180 aaKnown RBP8.03□□□□□ -1.12
SS18-203ENST00000415083 LINC00574Q9H8X3 128 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 PARD6AQ9NPB6 346 aa8.03□□□□□ -1.12
SS18-203ENST00000415083 TRAV5A0A0B4J249 113 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 TEX50A0A1B0GTY4 177 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 AREGP15514 252 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 CRYBB3P26998 211 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 TFPI2P48307 235 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 MRGPRG-AS1Q2M3A8 158 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 CMTM2Q8TAZ6 248 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 FAM167A-AS1Q96KT0 104 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 LINC00479Q96M42 142 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 HSPB9Q9BQS6 159 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 MRPL36Q9P0J6 103 aaKnown RBP8.02□□□□□ -1.13
SS18-203ENST00000415083 MBD3L4A6NDZ8 208 aaPredicted RBP8.02□□□□□ -1.13
SS18-203ENST00000415083 MBD3L3A6NE82 208 aaPredicted RBP8.02□□□□□ -1.13
SS18-203ENST00000415083 MBD3L5A6NJ08 208 aaPredicted RBP8.02□□□□□ -1.13
SS18-203ENST00000415083 C9JCJ5 164 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 ITGB1BP1O14713 200 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 RAB4AP20338 218 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 VHLLQ6RSH7 139 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 PIP4P1Q86T03 277 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 MBD3L2Q8NHZ7 208 aaPredicted RBP8.02□□□□□ -1.13
SS18-203ENST00000415083 OR51B2Q9Y5P1 312 aa8.02□□□□□ -1.13
SS18-203ENST00000415083 MDFIC2A0A1B0GVS7 189 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 M0R1B8 84 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 FXYD3Q14802 87 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 CENPWQ5EE01 88 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 LYG1Q8N1E2 194 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 FAM169BQ8N8A8 192 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 OR4S2Q8NH73 311 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 CCL13Q99616 98 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 TMEM106BQ9NUM4 274 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 FBXL7Q9UJT9 491 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 OTOGLQ3ZCN5 2332 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 ANKRD11Q6UB99 2663 aaPredicted RBP8.01□□□□□ -1.13
SS18-203ENST00000415083 IGHV1-46P01743 117 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 RNASE2P10153 161 aaKnown RBP8.01□□□□□ -1.13
SS18-203ENST00000415083 OR10J1P30954 320 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 ZNF90Q03938 601 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 KIAA1644Q3SXP7 199 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 TEX43Q6ZNM6 134 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 OR1L6Q8NGR2 347 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 LOXL4Q96JB6 756 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 NABP2Q9BQ15 211 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 TMEM208Q9BTX3 173 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 SFXN3Q9BWM7 321 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 TUBG2Q9NRH3 451 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 CUL9Q8IWT3 2517 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 SPAARA0A1B0GVQ0 90 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 UPK2O00526 184 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 OR10J4P0C629 311 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 GATA4P43694 442 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 IER3P46695 156 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 PRCDQ00LT1 54 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 GDF5OSQ5U4N7 250 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 ZNF841Q6ZN19 808 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 TMEM136Q6ZRR5 245 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 MMD2Q8IY49 270 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 OR8I2Q8N0Y5 310 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 DEFB108BQ8NET1 73 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 SLC25A2Q9BXI2 301 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 GNB4Q9HAV0 340 aa8.01□□□□□ -1.13
SS18-203ENST00000415083 CA1P00915 261 aaPredicted RBP8□□□□□ -1.13
SS18-203ENST00000415083 HOXC12P31275 282 aa8□□□□□ -1.13
SS18-203ENST00000415083 MRPS11P82912 194 aaKnown RBP8□□□□□ -1.13
SS18-203ENST00000415083 PSG5Q15238 335 aa8□□□□□ -1.13
SS18-203ENST00000415083 PQLC2Q6ZP29 291 aa8□□□□□ -1.13
SS18-203ENST00000415083 SLC25A48Q6ZT89 311 aaKnown RBP8□□□□□ -1.13
SS18-203ENST00000415083 ZCCHC24Q8N2G6 241 aaKnown RBP8□□□□□ -1.13
SS18-203ENST00000415083 RITA1Q96K30 269 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms