RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 PAX5Q02548 391 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 NPIPB3Q92617 1050 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 CHRDL1Q9BU40 450 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 C9JQL5 133 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 HYPMO75409 117 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 PPOXP50336 477 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 RANP62826 216 aaKnown RBP11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 TBX15Q96SF7 602 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 ZNF586Q9NXT0 402 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 MEF2BQ02080 365 aaPredicted RBP11.77□□□□□ -0.52
SHROOM1-203ENST00000378679 HERPUD1Q15011 391 aa11.77□□□□□ -0.52
SHROOM1-203ENST00000378679 PCSK4Q6UW60 755 aa11.77□□□□□ -0.52
SHROOM1-203ENST00000378679 NUP37Q8NFH4 326 aa11.77□□□□□ -0.52
SHROOM1-203ENST00000378679 HSBP1L1C9JCN9 74 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 CORTO00230 105 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 ANOS1P23352 680 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 CHEK1O14757 476 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 THBDP07204 575 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 PCP4P48539 62 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 RPL30P62888 115 aaKnown RBP11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 C16orf82Q7Z2V1 217 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 STXBP6Q8NFX7 210 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 TMEM133Q9H2Q1 129 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 SMDT1Q9H4I9 107 aa11.77□□□□□ -0.53
SHROOM1-203ENST00000378679 IGKV3-7A0A075B6H7 116 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 E7EQL1 145 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 CEACAM4O75871 244 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 ARL16Q0P5N6 197 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 FXYD3Q14802 87 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 UNQ5815/PRO19632Q6UWF5 114 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 AUP1Q9Y679 476 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 TRBV6-6A0A0A6YYG2 114 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 AMTP48728 403 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 HNRNPA3P51991 378 aaKnown RBP11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 CCL20P78556 96 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 WDR86Q86TI4 376 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 FAM168AQ92567 244 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 PITPNC1Q9UKF7 332 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 PTTG1IPP53801 180 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 ZNF430Q9H8G1 570 aaPredicted RBP11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 DKK4Q9UBT3 224 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 ELOA3CA0A087WX78 387 aaPredicted RBP11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 PAXXQ9BUH6 204 aa11.76□□□□□ -0.53
SHROOM1-203ENST00000378679 ARFGEF3Q5TH69 2177 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 IGKV1-6A0A0C4DH72 117 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 HELTA6NFD8 242 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 FCN1O00602 326 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 IGLV1-44P01699 117 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 LINC00205P59089 165 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 LY6EQ16553 131 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 PYY3Q5JQD4 70 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 HEPN1Q6WQI6 88 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 RCC1LQ96I51 464 aaKnown RBP11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 NAT8BQ9UHF3 227 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 FRYLO94915 3013 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 GRIFINA4D1Z8 144 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 WIPF3A6NGB9 483 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 PDE6DO43924 150 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 CD55P08174 381 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 CD24P25063 80 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 HLA-DRB5Q30154 266 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 OR5AU1Q8NGC0 362 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 OR4D5Q8NGN0 318 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 RBM14Q96PK6 669 aaKnown RBP11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 ARL2-SNX15V9GYD0 113 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 SONP18583 2426 aaKnown RBP11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 C5orf52A6NGY3 159 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 SAA1P0DJI8 122 aaPredicted RBP11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 OR10G8Q8NGN5 311 aa11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 PSMG3Q9BT73 122 aaPredicted RBP11.75□□□□□ -0.53
SHROOM1-203ENST00000378679 RBFOX2O43251 390 aaKnown RBP eCLIP11.74□□□□□ -0.537e-7■■■■□ 20.2
SHROOM1-203ENST00000378679 NDUFB4O95168 129 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 GOSR1O95249 250 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 ZNF788Q6ZQV5 615 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 Q6ZS49 121 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 DBX1A6NMT0 343 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 IGKV1D-33P01593 117 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 IGKV1-33P01594 117 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 TMEM200BQ69YZ2 307 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 PQLC2Q6ZP29 291 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 NAV2Q8IVL1 2488 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 OR1L6Q8NGR2 347 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 CEP192Q8TEP8 1941 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 SPTBN5Q9NRC6 3674 aaKnown RBP11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 IGHV3-35A0A0C4DH35 117 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 LRRC75BQ2VPJ9 315 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 ZNF525Q8N782 197 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 HIGD1AQ9Y241 93 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 GOLT1BQ9Y3E0 138 aa11.74□□□□□ -0.53
SHROOM1-203ENST00000378679 HSPB1P04792 205 aaKnown RBP11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 PF4V1P10720 104 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 Q6ZN92 141 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 OR4A5Q8NH83 315 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 GRAMD2BQ96HH9 432 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 NABP2Q9BQ15 211 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 DNAJC4Q9NNZ3 241 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 SLC31A2O15432 143 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 COMPP49747 757 aaPredicted RBP11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 NMSQ5H8A3 153 aa11.73□□□□□ -0.53
SHROOM1-203ENST00000378679 REC114Q7Z4M0 266 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms