RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NCS1P62166 190 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 GDPD1Q8N9F7 314 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 ZNF502Q8TBZ5 544 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 FCAMRQ8WWV6 532 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 MARC2Q969Z3 335 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 ATP6V0BQ99437 205 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 TEX50A0A1B0GTY4 177 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 SERPINE2P07093 398 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 RCVRNP35243 200 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 VBP1P61758 197 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 MZT2AQ6P582 158 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 OR1L6Q8NGR2 347 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 ISOC1Q96CN7 298 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 TSC22D3Q99576 134 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 MRPS26Q9BYN8 205 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 NDUFA4L2Q9NRX3 87 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 PRNDQ9UKY0 176 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 S4R3C0 116 aa14.39□□□□□ -0.11
CCDC28A-203ENST00000617445 MFSD2BA6NFX1 497 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 KRASP01116 189 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 OR13C7P0DN81 318 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 ELLP55199 621 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 UCP3P55916 312 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 GUCA2BQ16661 112 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 ZNF585BQ52M93 769 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 ZNF57Q68EA5 555 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 PLET1Q6UQ28 207 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 LINC00322Q6ZN03 302 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 SLC16A13Q7RTY0 426 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 OR10W1Q8NGF6 305 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 OR5B3Q8NH48 314 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 AP3S1Q92572 193 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 LSM10Q969L4 123 aaKnown RBP14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 FXYD6Q9H0Q3 95 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 OR51B2Q9Y5P1 312 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 CEPT1Q9Y6K0 416 aa14.38□□□□□ -0.11
CCDC28A-203ENST00000617445 TMEM213A2RRL7 107 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 RPA2P15927 270 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 ELK1P19419 428 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 ANKRD55Q3KP44 614 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 SNX29P2Q8IUI4 249 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 SLC38A6Q8IZM9 456 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 UXS1Q8NBZ7 420 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 TMEM56Q96MV1 263 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 EDA2RQ9HAV5 297 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 PLEKHA3Q9HB20 300 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 UFC1Q9Y3C8 167 aa14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 F11RQ9Y624 299 aaKnown RBP14.37□□□□□ -0.11
CCDC28A-203ENST00000617445 DNAH7Q8WXX0 4024 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 TRAV25A0A0B4J276 109 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 OR11H12B2RN74 326 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 C8orf88P0DMB2 117 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 GPR183P32249 361 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 G6PCP35575 357 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 WT1-ASQ06250 92 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 SLC25A24Q6NUK1 477 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 SPSB3Q6PJ21 355 aa14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 MRPL27Q9P0M9 148 aaKnown RBP14.36□□□□□ -0.11
CCDC28A-203ENST00000617445 HPGDSO60760 199 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 CD7P09564 240 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 PHLDA2Q53GA4 152 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 C15orf40Q8WUR7 153 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 WDR89Q96FK6 387 aaPredicted RBP14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 BSCL2Q96G97 398 aaPredicted RBP14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 HINT2Q9BX68 163 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 ZNF436Q9C0F3 470 aaPredicted RBP14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 TMEM14BQ9NUH8 114 aa14.35□□□□□ -0.11
CCDC28A-203ENST00000617445 TGOLN2O43493 480 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 GABARAPO95166 117 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 ZNF182P17025 639 aaPredicted RBP14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 EDN2P20800 178 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 CTF1Q16619 201 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 TBC1D26Q86UD7 250 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 TMEM61Q8N0U2 210 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 CACNG8Q8WXS5 425 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 GAR1Q9NY12 217 aaKnown RBP14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 MLXQ9UH92 298 aa14.34□□□□□ -0.11
CCDC28A-203ENST00000617445 C15orf61A6NNL5 157 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 FAM25AB3EWG3 89 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 FAM25CB3EWG5 89 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 FAM25GB3EWG6 89 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 ALDH3B2P48448 385 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 TM4SF20Q53R12 229 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 UNQ9165/PRO28630Q6UXU0 137 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 H2BFWTQ7Z2G1 175 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 GPR141Q7Z602 305 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 DEFB125Q8N687 156 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 ZNF486Q96H40 463 aaPredicted RBP14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 HIPK2Q9H2X6 1198 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 SRD5A3Q9H8P0 318 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 C21orf62Q9NYP8 219 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 NSG2Q9Y328 171 aa14.33□□□□□ -0.12
CCDC28A-203ENST00000617445 TBPP20226 339 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 GPR107Q5VW38 600 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 RBPMS2Q6ZRY4 209 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 ARRDC1Q8N5I2 433 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 OR52B4Q8NGK2 314 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 OR1P1Q8NH06 330 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 OR4A16Q8NH70 328 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 TMEM190Q8WZ59 177 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms