RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TAS2R46P59540 309 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 HSD17B13Q7Z5P4 300 aaPredicted RBP12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 SAMD12Q8N8I0 201 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 OR10W1Q8NGF6 305 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 OR5H2Q8NGV7 314 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 MARC2Q969Z3 335 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 FAM110AQ9BQ89 295 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 SELENOKQ9Y6D0 94 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 MARCH11A6NNE9 402 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 PMP2P02689 132 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 RLN1P04808 185 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 TRAPPC2P0DI81 140 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 TRAPPC2BP0DI82 140 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 C8orf88P0DMB2 117 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 RPA2P15927 270 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 ELLP55199 621 aaPredicted RBP12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 TM4SF20Q53R12 229 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 PLET1Q6UQ28 207 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 UNQ9165/PRO28630Q6UXU0 137 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 CADM3Q8N126 398 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 GDPD1Q8N9F7 314 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 OR1L8Q8NGR8 309 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 VN1R17PQ8TDU5 208 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 KRTAP17-1Q9BYP8 105 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 VCX3AQ9NNX9 186 aa12.43□□□□□ -0.42
CCDC28B-204ENST00000469003 A0A087WXM4 84 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 TEX50A0A1B0GTY4 177 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 SERPINE2P07093 398 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 OR13C7P0DN81 318 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 PRSS3P35030 304 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 LPAR6P43657 344 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 LSM3P62310 102 aaKnown RBP12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 WT1-ASQ06250 92 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 ANKRD55Q3KP44 614 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 BTNL8Q6UX41 500 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 CMTM1Q8IZ96 169 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 OR52B4Q8NGK2 314 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 IL17DQ8TAD2 202 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 FCAMRQ8WWV6 532 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 DGCR14Q96DF8 476 aaKnown RBP12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 LYSTQ99698 3801 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 ZNF436Q9C0F3 470 aaPredicted RBP12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 FXYD6Q9H0Q3 95 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 NDUFA4L2Q9NRX3 87 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 MRPL27Q9P0M9 148 aaKnown RBP12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 UFC1Q9Y3C8 167 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 DNAH1Q9P2D7 4330 aa12.42□□□□□ -0.42
CCDC28B-204ENST00000469003 TRAV25A0A0B4J276 109 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 GPR31O00270 319 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 TGOLN2O43493 480 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 SCAF4O95104 1147 aaKnown RBP12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 ZNF585BQ52M93 769 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 SLC25A24Q6NUK1 477 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 TSPAN14Q8NG11 270 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 OR6F1Q8NGZ6 308 aa12.41□□□□□ -0.42
CCDC28B-204ENST00000469003 IGHV3-35A0A0C4DH35 117 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 SNAPC5O75971 98 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 KRASP01116 189 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 HRH1P35367 487 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 G6PCP35575 357 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 RBPMS2Q6ZRY4 209 aaKnown RBP12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 LYSMD2Q8IV50 215 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 GPX8Q8TED1 209 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 LSM10Q969L4 123 aaKnown RBP12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 SLC25A46Q96AG3 418 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 ATP6V0BQ99437 205 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 OR51B2Q9Y5P1 312 aa12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 F11RQ9Y624 299 aaKnown RBP12.4□□□□□ -0.42
CCDC28B-204ENST00000469003 OR2T8A6NH00 312 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 TNFAIP8O95379 198 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 EIF4EP06730 217 aaKnown RBP12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 MFAP2P55001 183 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 SPSB3Q6PJ21 355 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 TMEM190Q8WZ59 177 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 BSCL2Q96G97 398 aaPredicted RBP12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 CMTM3Q96MX0 182 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 GGTLC1Q9BX51 225 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 HINT2Q9BX68 163 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 FAM212BQ9NTI7 297 aaPredicted RBP12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 PRNDQ9UKY0 176 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 NSG2Q9Y328 171 aa12.39□□□□□ -0.43
CCDC28B-204ENST00000469003 APOA1P02647 267 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 HLA-DMAP28067 261 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 LPCAT3Q6P1A2 487 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 OR1L6Q8NGR2 347 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 OR5B3Q8NH48 314 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 TMEM56Q96MV1 263 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 C5orf66Q9H5L9 145 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 SCPEP1Q9HB40 452 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 FKBP11Q9NYL4 201 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 C21orf62Q9NYP8 219 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 COMMD3Q9UBI1 195 aa12.38□□□□□ -0.43
CCDC28B-204ENST00000469003 LOC102724200A0A096LPH7 203 aaPredicted RBP12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 SMIM31A0A1B0GVY4 71 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 S100GP29377 79 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 TSPAN5P62079 268 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 PHLDA2Q53GA4 152 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 SLC38A6Q8IZM9 456 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 OR2C3Q8N628 320 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 SCARB1Q8WTV0 552 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms