RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 SPNS3Q6ZMD2 512 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM106CPP0CH98 169 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 PDLIM4P50479 330 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 RND2P52198 227 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 IQCJQ1A5X6 159 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM169BQ8N8A8 192 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 GNG4P50150 75 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 EIF4E3Q8N5X7 224 aaKnown RBP11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 OSR1Q8TAX0 266 aaPredicted RBP11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 RNF2Q99496 336 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 NDFIP1Q9BT67 221 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 MRPL20Q9BYC9 149 aaKnown RBP11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 CTDSP1Q9GZU7 261 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 RPRMQ9NS64 109 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 DPM3Q9P2X0 92 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 CARHSP1Q9Y2V2 147 aaKnown RBP11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 DENND4AQ7Z401 1863 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 CEACAM8P31997 349 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 KHDC3LQ587J8 217 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 C10orf113Q5VZT2 155 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 OR4A47Q6IF82 309 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 SSX7Q7RTT5 188 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 OR8I2Q8N0Y5 310 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 Q8WTZ3 238 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 NEUROG1Q92886 237 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 RAB24Q969Q5 203 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 C18orf12Q96KH6 178 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 SSBP3Q9BWW4 388 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 BARX1Q9HBU1 254 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 CRIM1Q9NZV1 1036 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 IGHV3OR16-10A0A075B7F0 116 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 SAA2-SAA4A0A096LPE2 208 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 KIAA1324LA8MWY0 1029 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 LINC00869P0C866 280 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 SAA2P0DJI9 122 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 IGFL2Q6UWQ7 119 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 DPPA3Q6W0C5 159 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 C20orf204Q6ZNR8 217 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 PDPNQ86YL7 162 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 VAMP8Q9BV40 100 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 CBY1Q9Y3M2 126 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 M0R143 59 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM157CP0CG43 387 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 TCL1AP56279 114 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM3BP58499 235 aaPredicted RBP11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 SMIM15Q7Z3B0 74 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 ST6GALNAC3Q8NDV1 305 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 PIMREGQ9BSJ6 248 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 RNF24Q9Y225 148 aa11.81□□□□□ -0.52
SHROOM1-203ENST00000378679 FOXH1O75593 365 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 PLAUP00749 431 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 DANCRP0C864 163 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 BCL2P10415 239 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 GNLYP22749 145 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 CDX1P47902 265 aaPredicted RBP11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 ZNF672Q499Z4 452 aaPredicted RBP11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 SIGLECL1Q8N7X8 197 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 CCL19Q99731 98 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 C1QTNF9BB2RNN3 333 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 C1QTNF9P0C862 333 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 SUMO1P63165 101 aaKnown RBP11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 COQ2Q96H96 371 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 DMRT1Q9Y5R6 373 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 CXorf1O96002 111 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 ID3Q02535 119 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 PNRC1Q12796 327 aaPredicted RBP11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 SRSF7Q16629 238 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 CHODLQ9H9P2 273 aa11.8□□□□□ -0.52
SHROOM1-203ENST00000378679 REV3LO60673 3130 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 COLCA2A8K830 154 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 TRANK1O15050 2925 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 TCF21O43680 179 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 SLC35B1P78383 322 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 IGF2-ASQ6U949 168 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 IGKV1D-17A0A075B6S4 117 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 CA2P00918 260 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 DUTP33316 252 aaKnown RBP11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 Q6ZR03 302 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 LRTM2Q8N967 370 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM222BQ8WU58 562 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 PERPQ96FX8 193 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 FBXL15Q9H469 300 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 NAT8Q9UHE5 227 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 YLPM1P49750 1951 aaKnown RBP11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 M0QZ24 198 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 IGLV3-1P01715 115 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 HOXA4Q00056 320 aaPredicted RBP11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 VN1R17PQ8TDU5 208 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 DCAF16Q9NXF7 216 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 RPUSD1Q9UJJ7 312 aaKnown RBP11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 TMEM131Q92545 1883 aa11.79□□□□□ -0.52
SHROOM1-203ENST00000378679 TMEM178BH3BS89 294 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 ARL3P36405 182 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 SELENOTP62341 195 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 DNM1P46Q6ZS02 220 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 OR2T10Q8NGZ9 312 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 WDR61Q9GZS3 305 aaKnown RBP11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 WISP2O76076 250 aa11.78□□□□□ -0.52
SHROOM1-203ENST00000378679 LY6HO94772 140 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 327 ms