RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ZNF502Q8TBZ5 544 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 FCAMRQ8WWV6 532 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 MARC2Q969Z3 335 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 EDA2RQ9HAV5 297 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 NDUFA4L2Q9NRX3 87 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 TMEM213A2RRL7 107 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 C8orf88P0DMB2 117 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 HLA-DMAP28067 261 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 S100GP29377 79 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 RORCP51449 518 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 ELLP55199 621 aaPredicted RBP13.37□□□□□ -0.27
HDDC3-201ENST00000330334 UCP3P55916 312 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 VBP1P61758 197 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 OR10W1Q8NGF6 305 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 FXYD6Q9H0Q3 95 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 FKBP11Q9NYL4 201 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 S4R3C0 116 aa13.37□□□□□ -0.27
HDDC3-201ENST00000330334 ZNF320A2RRD8 509 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 SNAPC5O75971 98 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 KRASP01116 189 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 IFNA6P05013 189 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 OR13C7P0DN81 318 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 RCVRNP35243 200 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 TSPAN5P62079 268 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 WT1-ASQ06250 92 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 ZNF57Q68EA5 555 aaPredicted RBP13.36□□□□□ -0.27
HDDC3-201ENST00000330334 OR5B3Q8NH48 314 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 ISOC1Q96CN7 298 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 PALMDQ9NP74 551 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 PRNDQ9UKY0 176 aa13.36□□□□□ -0.27
HDDC3-201ENST00000330334 CD7P09564 240 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 ELK1P19419 428 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 GUCA2BQ16661 112 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 PLET1Q6UQ28 207 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 UXS1Q8NBZ7 420 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 OR1L6Q8NGR2 347 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 LSM10Q969L4 123 aaKnown RBP13.35□□□□□ -0.27
HDDC3-201ENST00000330334 TSC22D3Q99576 134 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 ZNF436Q9C0F3 470 aaPredicted RBP13.35□□□□□ -0.27
HDDC3-201ENST00000330334 TMEM14BQ9NUH8 114 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 CEPT1Q9Y6K0 416 aa13.35□□□□□ -0.27
HDDC3-201ENST00000330334 TRAV25A0A0B4J276 109 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 OR11H12B2RN74 326 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 RPA2P15927 270 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 EDN2P20800 178 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 GPR183P32249 361 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 G6PCP35575 357 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 ANKRD55Q3KP44 614 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 MZT2AQ6P582 158 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 SLC38A6Q8IZM9 456 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 WDR89Q96FK6 387 aaPredicted RBP13.34□□□□□ -0.27
HDDC3-201ENST00000330334 TMEM56Q96MV1 263 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 PLEKHA3Q9HB20 300 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 MRPL27Q9P0M9 148 aaKnown RBP13.34□□□□□ -0.27
HDDC3-201ENST00000330334 MLXQ9UH92 298 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 UFC1Q9Y3C8 167 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 OR51B2Q9Y5P1 312 aa13.34□□□□□ -0.27
HDDC3-201ENST00000330334 F11RQ9Y624 299 aaKnown RBP13.34□□□□□ -0.27
HDDC3-201ENST00000330334 DYNC2H1Q8NCM8 4307 aaKnown RBP13.33□□□□□ -0.28
HDDC3-201ENST00000330334 TGOLN2O43493 480 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 HPGDSO60760 199 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 CTF1Q16619 201 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 TM4SF20Q53R12 229 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 SLC25A24Q6NUK1 477 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 SPSB3Q6PJ21 355 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 UNQ9165/PRO28630Q6UXU0 137 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 SLC16A13Q7RTY0 426 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 SNX29P2Q8IUI4 249 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 TMEM61Q8N0U2 210 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 CACNG8Q8WXS5 425 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 AP3S1Q92572 193 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 BSCL2Q96G97 398 aaPredicted RBP13.33□□□□□ -0.28
HDDC3-201ENST00000330334 HIPK2Q9H2X6 1198 aa13.33□□□□□ -0.28
HDDC3-201ENST00000330334 RBMY1BA6NDE4 496 aaKnown RBP13.32□□□□□ -0.28
HDDC3-201ENST00000330334 RBMY1EA6NEQ0 496 aaKnown RBP13.32□□□□□ -0.28
HDDC3-201ENST00000330334 GABARAPO95166 117 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 RBMY1DP0C7P1 496 aaKnown RBP13.32□□□□□ -0.28
HDDC3-201ENST00000330334 PHLDA2Q53GA4 152 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 TBC1D26Q86UD7 250 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 DEFB125Q8N687 156 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 SEC22AQ96IW7 307 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 NSG2Q9Y328 171 aa13.32□□□□□ -0.28
HDDC3-201ENST00000330334 TENM2Q9NT68 2774 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 C15orf61A6NNL5 157 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 ZNF182P17025 639 aaPredicted RBP13.31□□□□□ -0.28
HDDC3-201ENST00000330334 MFAP2P55001 183 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 OR1P1Q8NH06 330 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 SCARB1Q8WTV0 552 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 C15orf40Q8WUR7 153 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 HINT2Q9BX68 163 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 C5orf66Q9H5L9 145 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 SRD5A3Q9H8P0 318 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 C21orf62Q9NYP8 219 aa13.31□□□□□ -0.28
HDDC3-201ENST00000330334 CSMD3Q7Z407 3707 aa13.3□□□□□ -0.28
HDDC3-201ENST00000330334 TBPP20226 339 aa13.3□□□□□ -0.28
HDDC3-201ENST00000330334 RND3P61587 244 aa13.3□□□□□ -0.28
HDDC3-201ENST00000330334 TMEM190Q8WZ59 177 aa13.3□□□□□ -0.28
HDDC3-201ENST00000330334 ZNF486Q96H40 463 aaPredicted RBP13.3□□□□□ -0.28
HDDC3-201ENST00000330334 GAR1Q9NY12 217 aaKnown RBP13.3□□□□□ -0.28
HDDC3-201ENST00000330334 OR2T8A6NH00 312 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms