RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 OR9G1Q8NH87 305 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 ST6GALNAC6Q969X2 333 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 TMEM133Q9H2Q1 129 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 RRHO14718 337 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 S100A8P05109 93 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 FABP1P07148 127 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 WDR25Q64LD2 544 aaPredicted RBP14.85□□□□□ -0.03
COL9A3-205ENST00000466192 ZNF787Q6DD87 383 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 OR8B3Q8NGG8 313 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 CLDND2Q8NHS1 167 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 NANPQ8TBE9 248 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 RAB1CQ92928 201 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 OR8B2Q96RD0 313 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 SMDT1Q9H4I9 107 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 MIOXQ9UGB7 285 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 TIMM9Q9Y5J7 89 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 FLNCQ14315 2725 aa14.85□□□□□ -0.03
COL9A3-205ENST00000466192 TRAV1-1A0A0B4J248 108 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 H0YJW9 148 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 IGKV1D-33P01593 117 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 IGKV1-33P01594 117 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 MYOD1P15172 320 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 IGFBP2P18065 325 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 RPP30P78346 268 aaKnown RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 VWC2Q2TAL6 325 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 ACSM6Q6P461 480 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 CENPVQ7Z7K6 275 aaPredicted RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 OR5AN1Q8NGI8 311 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 NEIL1Q96FI4 390 aaPredicted RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 TIMD4Q96H15 378 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 NPCDR1Q9BY65 106 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 UBTD1Q9HAC8 227 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 TMEM14BQ9NUH8 114 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 GNG13Q9P2W3 67 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 FOXA2Q9Y261 457 aaPredicted RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 LY86O95711 162 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 IL6RP08887 468 aaPredicted RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 FBP1P09467 338 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 CDKN1AP38936 164 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 AKR1C3P42330 323 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 CEBPGP53567 150 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 ICAM4Q14773 271 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 RPP25LQ8N5L8 163 aaKnown RBP14.84□□□□□ -0.03
COL9A3-205ENST00000466192 TMEM186Q96B77 213 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 C20orf24Q9BUV8 137 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 AKAP6Q13023 2319 aa14.84□□□□□ -0.03
COL9A3-205ENST00000466192 SPTAN1Q13813 2472 aaKnown RBP14.83□□□□□ -0.03
COL9A3-205ENST00000466192 PPIAL4CA0A0B4J2A2 164 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 SCAF4O95104 1147 aaKnown RBP14.83□□□□□ -0.04
COL9A3-205ENST00000466192 PPIAL4GP0DN37 164 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 ZNF137PP52743 207 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 PRB3Q04118 309 aaPredicted RBP14.83□□□□□ -0.04
COL9A3-205ENST00000466192 SOHLH1Q5JUK2 328 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 FAM71F2Q6NXP2 309 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 MBD3L1Q8WWY6 194 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 NABP2Q9BQ15 211 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 ZFP92A6NM28 416 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 M0R036 132 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 APOA2P02652 100 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 CD1BP29016 333 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 HSPE1P61604 102 aaKnown RBP14.83□□□□□ -0.04
COL9A3-205ENST00000466192 ZNF506Q5JVG8 444 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 ZFP82Q8N141 532 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 ZNF709Q8N972 641 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 C8orf46Q8TAG6 207 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 TMEM170AQ8WVE7 144 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 HINT2Q9BX68 163 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 CHODLQ9H9P2 273 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 GSN-AS1Q9NRJ2 163 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 OR51B2Q9Y5P1 312 aa14.83□□□□□ -0.04
COL9A3-205ENST00000466192 COL12A1Q99715 3063 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 SMCO3A2RU48 225 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 NDUFS7O75251 213 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 OPN1MWP04001 364 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 OPN1MW2P0DN77 364 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 OPN1MW3P0DN78 364 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 RAB5BP61020 215 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 AWAT1Q58HT5 328 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 FFAR4Q5NUL3 377 aa14.82□□□□□ -0.04
COL9A3-205ENST00000466192 IGHV2-26A0A0B4J1V2 119 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 MAP1LC3B2A6NCE7 125 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 S100A9P06702 114 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SNRNP70P08621 437 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 OSR1Q8TAX0 266 aaPredicted RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 MAP1LC3BQ9GZQ8 125 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 RPS10P5Q9NQ39 176 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SLC39A9Q9NUM3 307 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 ASH1LQ9NR48 2969 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 ZFYVE26Q68DK2 2539 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 TRAV20A0A0B4J274 112 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 COLCA2A8K830 154 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 C22orf46C9J442 243 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 UPK2O00526 184 aa14.81□□□□□ -0.04
COL9A3-205ENST00000466192 HMGB3O15347 200 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SRP19P09132 144 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SAA1P0DJI8 122 aaPredicted RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 MDKP21741 143 aaPredicted RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SNRPEP62304 92 aaKnown RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 HABP2Q14520 560 aaPredicted RBP14.81□□□□□ -0.04
COL9A3-205ENST00000466192 SLC25A22Q9H936 323 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms