RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MMD2Q8IY49 270 aa11.88□□□□□ -0.51
SHROOM1-203ENST00000378679 OR1B1Q8NGR6 318 aa11.88□□□□□ -0.51
SHROOM1-203ENST00000378679 TAF15Q92804 592 aaKnown RBP eCLIP11.88□□□□□ -0.51
SHROOM1-203ENST00000378679 HIF1ANQ9NWT6 349 aa11.88□□□□□ -0.51
SHROOM1-203ENST00000378679 CDKN1AP38936 164 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 KDF1Q8NAX2 398 aaPredicted RBP11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 C1orf147Q96MC9 270 aaPredicted RBP11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 CTXND1A0A1B0GTU2 59 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 G3V3Q6 166 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 H0YIZ8 118 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 TM4SF5O14894 197 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 PAX6P26367 422 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 LGALS7P47929 136 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 HABP2Q14520 560 aaPredicted RBP11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 PSG5Q15238 335 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 OR1L4Q8NGR5 311 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 METTL1Q9UBP6 276 aaKnown RBP11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 TUBD1Q9UJT1 453 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 DPRXA6NFQ7 191 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 TNFSF13O75888 250 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 OR4X1Q8NH49 305 aa11.87□□□□□ -0.51
SHROOM1-203ENST00000378679 PAGE4O60829 102 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 PMCHP20382 165 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 DDTP30046 118 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 SUPT4H1P63272 117 aaKnown RBP11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 BIVMQ86UB2 503 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 MS4A10Q96PG2 267 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 TECRQ9NZ01 308 aaKnown RBP11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 PAM16Q9Y3D7 125 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 CELSR3Q9NYQ7 3312 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 IGSF23A1L1A6 192 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 K7EM74 188 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 ZNF331Q9NQX6 463 aaPredicted RBP11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 METRNQ9UJH8 293 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 LINC00312Q9Y6C7 94 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 DOCK11Q5JSL3 2073 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 C11orf94C9JXX5 98 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 OR10J1P30954 320 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 ERVFC1-1P60608 527 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 PRB3Q04118 309 aaPredicted RBP11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 MEF2CQ06413 473 aaPredicted RBP11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 SMIM8Q96KF7 97 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 GINS3Q9BRX5 216 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 RNF126Q9BV68 326 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 VAX2Q9UIW0 290 aa11.86□□□□□ -0.51
SHROOM1-203ENST00000378679 MUC22E2RYF6 1773 aaPredicted RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 ZNF785A8K8V0 405 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 SNRPCP09234 159 aaKnown RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 GALR1P47211 349 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 VPS25Q9BRG1 176 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 TMEM56-RWDD3S4R434 201 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 GATCO43716 136 aaKnown RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 USF1P22415 310 aaPredicted RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 OR4F17Q8NGA8 305 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 NEU4Q8WWR8 484 aaPredicted RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 QTRT1Q9BXR0 403 aaKnown RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 CBLN4Q9NTU7 201 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 CCDC168Q8NDH2 2452 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 SLC25A5P05141 298 aaKnown RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 CFPP27918 469 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 ECSCRQ19T08 205 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 ZNF324BQ6AW86 544 aaPredicted RBP11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 PXMP4Q9Y6I8 212 aa11.85□□□□□ -0.51
SHROOM1-203ENST00000378679 ADCYAP1P18509 176 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 MORN2Q502X0 79 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 ASCL4Q6XD76 172 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 TMEM204Q9BSN7 226 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 IGHV3-48P01763 117 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 KIAA1549LQ6ZVL6 1849 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 CEACAM18A8MTB9 384 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 YPEL1O60688 119 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 YPEL2Q96QA6 119 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 TMEM167BQ9NRX6 74 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 FAM215AQ9Y5M1 114 aa11.84□□□□□ -0.51
SHROOM1-203ENST00000378679 EGR1P18146 543 aa11.83□□□□□ -0.51
SHROOM1-203ENST00000378679 RAB4AP20338 218 aa11.83□□□□□ -0.51
SHROOM1-203ENST00000378679 GFI1BQ5VTD9 330 aa11.83□□□□□ -0.51
SHROOM1-203ENST00000378679 MIC13Q5XKP0 118 aa11.83□□□□□ -0.51
SHROOM1-203ENST00000378679 AAMDCQ9H7C9 122 aa11.83□□□□□ -0.51
SHROOM1-203ENST00000378679 TRAPPC1Q9Y5R8 145 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 CFAP54Q96N23 3096 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 MPDU1O75352 247 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 TRGC1P0CF51 173 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 SRP14P37108 136 aaKnown RBP11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 CA7P43166 264 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 OR5I1Q13606 314 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 CD177Q8N6Q3 437 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 RNF166Q96A37 237 aaPredicted RBP11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 RFNGQ9Y644 331 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 VAMP3Q15836 100 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 BSXQ3C1V8 233 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 OR5B3Q8NH48 314 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 FAM216AQ8WUB2 273 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 MANBALQ9NQG1 85 aa11.83□□□□□ -0.52
SHROOM1-203ENST00000378679 RAMP3O60896 148 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 REG1AP05451 166 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 PKIAP61925 76 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 LCN2P80188 198 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 ADIPOQQ15848 244 aa11.82□□□□□ -0.52
SHROOM1-203ENST00000378679 Q6P435 159 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 245 ms