RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 FOXA2Q9Y261 457 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-221ENST00000599833 TRAV3A0A0B4J244 114 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 A0A1W2PN81 502 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 PI3P19957 117 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 CHRNA7P36544 502 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 CDX1P47902 265 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 GNB1P62873 340 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 MEF2DQ14814 521 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 OR4A47Q6IF82 309 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 LPCAT3Q6P1A2 487 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 C8orf86Q6ZUL3 223 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 CMTM1Q8IZ96 169 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 ZNF491Q8N8L2 437 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 OR4F17Q8NGA8 305 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 OR4F4Q96R69 305 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 FAM212BQ9NTI7 297 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 COMMD9Q9P000 198 aa15.17■□□□□ 0.02
SHKBP1-221ENST00000599833 TEX22C9J3V5 150 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 HRASP01112 189 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 IFNA6P05013 189 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 MYOD1P15172 320 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 S100A5P33763 92 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 RAB9AP51151 201 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 PPP5CP53041 499 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 CXorf66Q5JRM2 361 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 UNQ5815/PRO19632Q6UWF5 114 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 SSX9Q7RTT3 188 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 MMD2Q8IY49 270 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 WFDC9Q8NEX5 89 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 MARCH1Q8TCQ1 289 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 CD300LFQ8TDQ1 290 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 SRSF12Q8WXF0 261 aaKnown RBP15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 ZNF486Q96H40 463 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 GNB4Q9HAV0 340 aa15.16■□□□□ 0.02
SHKBP1-221ENST00000599833 RBMXL2O75526 392 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 BRI3O95415 125 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 NQO2P16083 231 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 TNXAQ16473 311 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 KHDC1LQ5JSQ8 128 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 ZNF695Q8IW36 515 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 CADM3Q8N126 398 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 Q8N402 240 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 KLHL30-AS1Q8NEE0 82 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 OR5M8Q8NGP6 311 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 P2RX4Q99571 388 aa15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 RTBDNQ9BSG5 229 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-221ENST00000599833 MSGN1A6NI15 193 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 I3L521 148 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 MPPED1O15442 326 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 CNIH1O95406 144 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 LPAR6P43657 344 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 TMEM267Q0VDI3 215 aaPredicted RBP15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 SCGB2B2Q4G0G5 96 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 PYDC2Q56P42 97 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 LINC00482Q8N8I6 264 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 OR51S1Q8NGJ8 323 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 VSTM2AQ8TAG5 236 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 ABHD5Q8WTS1 349 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 RAX2Q96IS3 184 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 UBE2E2Q96LR5 201 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 C5orf66Q9H5L9 145 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 GPR132Q9UNW8 380 aa15.14■□□□□ 0.01
SHKBP1-221ENST00000599833 MARCH11A6NNE9 402 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 UPK2O00526 184 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 CTSDP07339 412 aaPredicted RBP15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 FGF2P09038 288 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 PF4V1P10720 104 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 SLC6A1P30531 599 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 PIGPP57054 158 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 RUNX1Q01196 453 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 FHL3Q13643 280 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 BAK1Q16611 211 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 DEFB136Q30KP8 78 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 ADAD2Q8NCV1 583 aaKnown RBP15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 OR4A5Q8NH83 315 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 C4orf3Q8WVX3 66 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 DUX3Q96PT4 197 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 TP53RKQ96S44 253 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 HRASLSQ9HDD0 168 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 TMEM140Q9NV12 185 aa15.13■□□□□ 0.01
SHKBP1-221ENST00000599833 DISC1C4P0D8 188 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 APELAP0DMC3 54 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 PGAM2P15259 253 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 SURF2Q15527 256 aaPredicted RBP15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 MRPL41Q8IXM3 137 aaKnown RBP15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 POC5Q8NA72 575 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 OR5T1Q8NG75 326 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 SEC22AQ96IW7 307 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 TMEM68Q96MH6 324 aa15.12■□□□□ 0.01
SHKBP1-221ENST00000599833 H0Y980 276 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 H3BUA1 57 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 CREBL2O60519 120 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 OR9G9P0C7N8 305 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 P0C879 139 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 RPA2P15927 270 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 HLA-GP17693 338 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 MAS1LP35410 378 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 G6PCP35575 357 aa15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 RPL8P62917 257 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-221ENST00000599833 ZNF45Q02386 682 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms