RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 C5orf30Q96GV9 206 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 RNF5Q99942 180 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 HINT2Q9BX68 163 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 MAGT1Q9H0U3 335 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 SIRPDQ9H106 197 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 HEYLQ9NQ87 328 aaPredicted RBP5.03□□□□□ -1.6
LIG3-206ENST00000586058 BET1LQ9NYM9 111 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 C1RLQ9NZP8 487 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 HSPB7Q9UBY9 170 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 FOXA2Q9Y261 457 aaPredicted RBP5.03□□□□□ -1.6
LIG3-206ENST00000586058 ZNF257Q9Y2Q1 563 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 FAM96BQ9Y3D0 163 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 STRAPQ9Y3F4 350 aaKnown RBP5.03□□□□□ -1.6
LIG3-206ENST00000586058 ARHGAP32A7KAX9 2087 aa5.03□□□□□ -1.6
LIG3-206ENST00000586058 BTBD17A6NE02 478 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 ODF3BA8MYP8 253 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 FAM157AC9JC47 383 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 G3V3Q6 166 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 NPFFO15130 113 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 CYB5BO43169 146 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 PITX3O75364 302 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 MOSP00540 346 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 IFNA10P01566 189 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 IFNA5P01569 189 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 FAM106CPP0CH98 169 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SAA1P0DJI8 122 aaPredicted RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 CXCL2P19875 107 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 ZFP36P26651 326 aaKnown RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 CD1BP29016 333 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 MAS1LP35410 378 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SNCAP37840 140 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SULT1A1P50225 295 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SUB1P53999 127 aaKnown RBP eCLIP5.02□□□□□ -1.61
LIG3-206ENST00000586058 RPL8P62917 257 aaKnown RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 EWSR1Q01844 656 aaKnown RBP eCLIP5.02□□□□□ -1.61
LIG3-206ENST00000586058 ID3Q02535 119 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 LOXL1Q08397 574 aaPredicted RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 MMDQ15546 238 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 NDUFA5Q16718 116 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 LGALSLQ3ZCW2 172 aaPredicted RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 Q5BKY6 102 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SPANXN5Q5MJ07 72 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 CFAP161Q6P656 301 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 ZNF429Q86V71 674 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 PDZD9Q8IXQ8 264 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 C11orf42Q8N5U0 333 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 Q8N7P7 452 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 LRRC20Q8TCA0 184 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 MALSU1Q96EH3 234 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 PHYHIPLQ96FC7 376 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 SMIM8Q96KF7 97 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 Q96MF0 132 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 PSMG3-AS1Q96PY0 264 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 RBKSQ9H477 322 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 C7orf69Q9H7B7 122 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 PLSCR3Q9NRY6 295 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 HIF1ANQ9NWT6 349 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 ZNRD1Q9P1U0 126 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 HILPDAQ9Y5L2 63 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 OR51B2Q9Y5P1 312 aa5.02□□□□□ -1.61
LIG3-206ENST00000586058 HRNRQ86YZ3 2850 aaPredicted RBP5.02□□□□□ -1.61
LIG3-206ENST00000586058 A0A0G2JRQ6 117 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 A0A1W2PRD5 423 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 A0A1W2PRF3 423 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 A0A1W2PRM7 423 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 RNF222A6NCQ9 220 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 RNASEK-C17orf49H0YIS7 233 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 H3BP45 60 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 UPK2O00526 184 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 RGS13O14921 159 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 TIMM23O14925 209 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 NBR2O15453 112 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SLC25A17O43808 307 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 CHST1O43916 411 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 IGKV1D-33P01593 117 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 IGKV1-33P01594 117 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 IGKV1-16P04430 117 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SNRNP70P08621 437 aaKnown RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 FBP1P09467 338 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 OR9G9P0C7N8 305 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 HKR1P10072 659 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 TMEM11P17152 192 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SAA4P35542 130 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 ATP5IP56385 69 aaPredicted RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 BPIFB3P59826 476 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 ERHP84090 104 aaKnown RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 TMEM267Q0VDI3 215 aaPredicted RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 IL15RAQ13261 267 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SCGB2A2Q13296 93 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SSX2Q16385 188 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 TNXAQ16473 311 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 CXorf66Q5JRM2 361 aaPredicted RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 TEX261Q6UWH6 196 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 HSD17B13Q7Z5P4 300 aaPredicted RBP5.01□□□□□ -1.61
LIG3-206ENST00000586058 VKORC1L1Q8N0U8 176 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 TEX45Q8NA69 505 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 OR10P1Q8NGE3 313 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 OR1L8Q8NGR8 309 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 TMEM167AQ8TBQ9 72 aa5.01□□□□□ -1.61
LIG3-206ENST00000586058 SCGB1C1Q8TD33 95 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms