RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 J3QW42 95 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 CD5P06127 495 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 APELAP0DMC3 54 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 OPRK1P41145 380 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 RHOBP62745 196 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 RPL31P62899 125 aaKnown RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 HOXA4Q00056 320 aaPredicted RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 MST1LQ2TV78 715 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 ZDHHC11Q9H8X9 412 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 CALYQ9NYX4 217 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 TGOLN2O43493 480 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 PTBP3O95758 552 aaKnown RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 DPPA3Q6W0C5 159 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 COLCA1Q6ZS62 124 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 MOB3BQ86TA1 216 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 MDS2Q8NDY4 140 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 DAZAP1Q96EP5 407 aaKnown RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 IGHV2OR16-5A0A0B4J2B6 119 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 IGKV1-6A0A0C4DH72 117 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 A0A0G2JRQ6 117 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 IQCF6A8MYZ5 107 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 SRP19P09132 144 aaKnown RBP9.78□□□□□ -0.84
NPHP4-204ENST00000460696 C1orf185Q5T7R7 199 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 ACSM6Q6P461 480 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF497Q6ZNH5 498 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 OR2T10Q8NGZ9 312 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 BTF3L4Q96K17 158 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 GAL3ST2Q9H3Q3 398 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 ASCL3Q9NQ33 180 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 SIRT7Q9NRC8 400 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 B4DEV8 164 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 J3QR06 171 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 MIC13Q5XKP0 118 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 OR10A7Q8NGE5 316 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 MANBALQ9NQG1 85 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 USP9XQ93008 2570 aaPredicted RBP9.78□□□□□ -0.84
NPHP4-204ENST00000460696 FAM90A26D6RGX4 464 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 RAB29O14966 203 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 COX7A2P2O60397 106 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 LYL1P12980 280 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 NMSQ5H8A3 153 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 SNRNP40Q96DI7 357 aaKnown RBP9.78□□□□□ -0.84
NPHP4-204ENST00000460696 HARBI1Q96MB7 349 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 QTRT1Q9BXR0 403 aaKnown RBP9.78□□□□□ -0.84
NPHP4-204ENST00000460696 PRO1933Q9H354 126 aa9.78□□□□□ -0.84
NPHP4-204ENST00000460696 XKRY2A2RUG3 117 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 COX7A1P24310 79 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 ACSF3Q4G176 576 aaPredicted RBP9.77□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF525Q8N782 197 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 GTF3AQ92664 365 aaKnown RBP9.77□□□□□ -0.84
NPHP4-204ENST00000460696 ADTRPQ96IZ2 230 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 USB1Q9BQ65 265 aaKnown RBP9.77□□□□□ -0.84
NPHP4-204ENST00000460696 TMEM140Q9NV12 185 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 TRAPPC1Q9Y5R8 145 aa9.77□□□□□ -0.84
NPHP4-204ENST00000460696 NDUFB4O95168 129 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 LINC00205P59089 165 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 PSG5Q15238 335 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 WDR82Q6UXN9 313 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 C16orf82Q7Z2V1 217 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 YLPM1P49750 1951 aaKnown RBP9.77□□□□□ -0.85
NPHP4-204ENST00000460696 TOX4O94842 621 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 GNLYP22749 145 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 KIR2DS2P43631 304 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 SPCS3P61009 180 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 Q6ZRM9 215 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 VSIRQ9H7M9 311 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 FUT9Q9Y231 359 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 PXMP4Q9Y6I8 212 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 EML5Q05BV3 1969 aa9.77□□□□□ -0.85
NPHP4-204ENST00000460696 SEC14L6B5MCN3 397 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 C10orf142B7Z368 130 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 SS18L1O75177 396 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF506Q5JVG8 444 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 MISP3Q96FF7 219 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 HES4Q9HCC6 221 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 KIR2DL2P43627 348 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 UBE2G1P62253 170 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 TFF3Q07654 80 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 LRRC75BQ2VPJ9 315 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 C9orf152Q5JTZ5 239 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 TEPPQ6URK8 271 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 LRP11Q86VZ4 500 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 ZCCHC24Q8N2G6 241 aaKnown RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 SLC24A4Q8NFF2 622 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 SSC4DQ8WTU2 575 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 TMEM18Q96B42 140 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 SLC25A10Q9UBX3 287 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 TNRC18O15417 2968 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 LOC102723971A0A1B0GUV8 181 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 A0A1W2PRD5 423 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 A0A1W2PRF3 423 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 A0A1W2PRM7 423 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 LY86O95711 162 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 SMIM6P0DI80 62 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 THBS3P49746 956 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 LILRB1Q8NHL6 650 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-204ENST00000460696 NPVFQ9HCQ7 196 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 METRNQ9UJH8 293 aa9.76□□□□□ -0.85
NPHP4-204ENST00000460696 IGHV3-72A0A0B4J1Y9 119 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 IGKV1-5P01602 117 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms