RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	NUR1	Q12066	484 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	MAS1	P10507	462 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	RAD27	P26793	382 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	GCD6	P32501	712 aa	Known RBP	11.22	□□□□□ -0.61
VPS60	YDR486C	YBR053C	P38235	358 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	RGD1	P38339	666 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	NMD3	P38861	518 aa	Known RBP	11.22	□□□□□ -0.61
VPS60	YDR486C	TMA108	P40462	946 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	PRK1	P40494	810 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	GUF1	P46943	645 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	YML6	P51998	286 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	YGR283C	P53336	341 aa	Predicted RBP	11.22	□□□□□ -0.61
VPS60	YDR486C	YNL108C	P53929	270 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	NOP6	Q07623	225 aa	Known RBP	11.22	□□□□□ -0.61
VPS60	YDR486C	SAM3	Q08986	587 aa		11.22	□□□□□ -0.61
VPS60	YDR486C	NOP58	Q12499	511 aa	Known RBP	11.22	□□□□□ -0.61
VPS60	YDR486C	YPK1	P12688	680 aa	Known RBP	11.21	□□□□□ -0.61
VPS60	YDR486C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	11.21	□□□□□ -0.61	not detected
VPS60	YDR486C	PGS1	P25578	521 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	TIF5	P38431	405 aa	Known RBP	11.21	□□□□□ -0.61
VPS60	YDR486C	MSG5	P38590	489 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	FHL1	P39521	936 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	ERP2	P39704	215 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	MMF1	P40185	145 aa	Known RBP	11.21	□□□□□ -0.61
VPS60	YDR486C	ARG2	P40360	574 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	NMD5	P46970	1048 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	HRD3	Q05787	833 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	THI7	Q05998	598 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	APL5	Q08951	932 aa	Known RBP	11.21	□□□□□ -0.61
VPS60	YDR486C	YDR018C	Q12185	396 aa		11.21	□□□□□ -0.61
VPS60	YDR486C	CDC8	P00572	216 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	PRP9	P19736	530 aa	Known RBP	11.2	□□□□□ -0.62
VPS60	YDR486C	URK1	P27515	501 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	MEI4	P29467	408 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	11.2	□□□□□ -0.62	not detected
VPS60	YDR486C	STB5	P38699	743 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	RIM4	P38741	713 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	YMR134W	P40207	237 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	MKT1	P40850	830 aa	Known RBP	11.2	□□□□□ -0.62
VPS60	YDR486C	SAP185	P40856	1058 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	VTC4	P47075	721 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	VPS25	P47142	202 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	YNL247W	P53852	767 aa	Known RBP	11.2	□□□□□ -0.62
VPS60	YDR486C	UTP6	Q02354	440 aa	Known RBP	11.2	□□□□□ -0.62
VPS60	YDR486C	EAR1	Q03212	550 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	RKM2	Q03942	479 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	FMP25	Q08023	583 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	THI21	Q08975	551 aa		11.2	□□□□□ -0.62
VPS60	YDR486C	POL3	P15436	1097 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	IDI1	P15496	288 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	UBC6	P33296	250 aa	Predicted RBP	11.19	□□□□□ -0.62
VPS60	YDR486C	FLC2	P39719	783 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	MAF1	P41910	395 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	YNL320W	P42840	284 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	YJL045W	P47052	634 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	BET4	Q00618	327 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	HER2	Q03557	464 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	SPO71	Q03868	1245 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	RIO1	Q12196	484 aa	Known RBP	11.19	□□□□□ -0.62
VPS60	YDR486C	MNL2	Q12205	849 aa		11.19	□□□□□ -0.62
VPS60	YDR486C	RGR1	P19263	1082 aa		11.18	□□□□□ -0.62
VPS60	YDR486C	SLY1	P22213	666 aa		11.18	□□□□□ -0.62
VPS60	YDR486C	DSS4	P32601	143 aa		11.18	□□□□□ -0.62
VPS60	YDR486C	OLA1	P38219	394 aa	Known RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	ECM2	P38241	364 aa	Known RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	MIC19	P43594	170 aa		11.18	□□□□□ -0.62
VPS60	YDR486C	CEG1	Q01159	459 aa	Predicted RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	MTD1	Q02046	320 aa	Known RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	SPG3	Q04398	127 aa	Predicted RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	ECM22	Q05958	814 aa	Predicted RBP	11.18	□□□□□ -0.62
VPS60	YDR486C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	11.17	□□□□□ -0.62	not detected
VPS60	YDR486C	YCR015C	P25616	317 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	HXT3	P32466	567 aa	Known RBP	11.17	□□□□□ -0.62
VPS60	YDR486C	LAS1	P36146	502 aa	Predicted RBP	11.17	□□□□□ -0.62
VPS60	YDR486C	VHC1	P38329	1120 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	SAW1	P39735	261 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	ALY2	P47029	1046 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	KTR6	P54070	446 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	INA17	Q02888	182 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	IZH4	Q99393	312 aa		11.17	□□□□□ -0.62
VPS60	YDR486C	PEX1	P24004	1043 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	GPI10	P30777	616 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	YKR051W	P36142	418 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	ATG36	P46983	293 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	PEX31	P53203	462 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	YNL034W	P53963	612 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	YNL018C	P53976	612 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	GCN5	Q03330	439 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	AIM32	Q04689	311 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	YLR257W	Q06146	321 aa	Known RBP	11.16	□□□□□ -0.62
VPS60	YDR486C	ACM1	Q08981	209 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	ARP7	Q12406	477 aa		11.16	□□□□□ -0.62
VPS60	YDR486C	CCP1	P00431	361 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	SPE1	P08432	466 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	PDE1	P22434	369 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	DAL1	P32375	460 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	NFU1	P32860	256 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	TSA1	P34760	196 aa	Known RBP	11.15	□□□□□ -0.62
VPS60	YDR486C	CDC27	P38042	758 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	SSP1	P38871	571 aa		11.15	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 73.5 ms